Superficieibacter sp. HKU1: P0H77_10090
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Entry
P0H77_10090 CDS
T08896
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
supe
Superficieibacter sp. HKU1
Brite
KEGG Orthology (KO) [BR:
supe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
supe03032
]
P0H77_10090 (topA)
03400 DNA repair and recombination proteins [BR:
supe03400
]
P0H77_10090 (topA)
Enzymes [BR:
supe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
P0H77_10090 (topA)
DNA replication proteins [BR:
supe03032
]
Prokaryotic type
DNA Topoisomerases
P0H77_10090 (topA)
DNA repair and recombination proteins [BR:
supe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
P0H77_10090 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WES70294
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Position
2116566..2119163
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AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAAKKSADSASTKTAKKPK
KDERGALVNRMGIDPWHNWEAQYEVLPGKEKVVAELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDKRYSRVVFNEITKNAIRQAFDKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDANVATPGGDSLPLQVTH
QNDKSFRPVNRETTMAAVSVLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGYG
VKKTMMLAQRLYEAGYITYMRTDSTNLSKDAVDMVRGYIDDKFGKKYLPADANQYASKDN
SQEAHEAIRPSDVAVEADALKDMETDAQKLYQLIWRQFVACQMTPAQYDSTTITVKAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRILPAVNQGDELSLIDIVPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVESRRFYAEKMGEIVTDRLKDNFRELMNF
DFTAQMEDRLDQVARHEAEWQKVLDIFFAEFSEQLQTAEKDPAEGGMQPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKH
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNEECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELYRFRDRMPEKLRYLADAPQQDPEGNKTVVRFSRKTKQQYV
AAEKEGKATGWSAFFIDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgttgagtccccggcaaaagccaaaacgatcaataagtat
ctgggtaatgactacgtggtgaaatccagcgtcggtcatatccgcgatttgccgaccagt
ggctcagccgccaaaaagagcgctgactctgcctccaccaaaacggccaaaaagcccaaa
aaggatgaacgcggcgcgctcgtcaaccgcatgggcattgacccgtggcataactgggag
gcgcaatatgaagtgctcccggggaaagaaaaggttgtcgctgaactgaaacagctggct
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaggccatcgcc
tggcacctgcgggaagtgatcggtggagatgacaaacgctacagccgggtagtgtttaac
gaaattactaaaaacgcgatccgccaggcgtttgataagccgggcgaactcaatatcgat
cgtgttaatgctcagcaggcgcgtcgttttatggaccgcgtagtgggctatatggtctct
ccgctgctgtggaaaaaaatcgcccgtggcctgtcggctggacgcgtacagtccgtcgcc
gtgcgtctggtggttgagcgcgagcgtgagatcaaagcgtttgtcccggaagagttctgg
gaagtcgatgccaatgttgctaccccaggcggtgattccctgccgcttcaggtgacgcat
cagaatgacaaatcgttccgtccggtaaaccgcgaaaccaccatggcggcggtcagcgtg
ctggaaaaagcgcgctatagcgtgctggagcgcgaagataaaccgaccagcagcaagccc
ggcgcgccgtttatcacctccacgctacaacaggcggccagtacccgtctgggctacggg
gtgaaaaaaaccatgatgctggcacagcgcctgtatgaagcgggctatatcacctatatg
cgtaccgattctaccaacctgagtaaggatgcggtggacatggttcgtggttatattgat
gataagtttggcaaaaaatatttgcccgccgatgctaatcagtacgccagcaaagacaac
tcgcaggaagcacacgaagcgattcgtccttccgatgtggcggttgaagctgacgccctg
aaagacatggaaactgacgcgcaaaagctgtatcagctgatctggcgtcagttcgttgcc
tgtcagatgacgcctgcacagtacgattccaccacgataaccgtaaaagccggtgatttc
cgcctgaaagcgcggggccgtattctgcgttttgacggctggaccaaagtcatgccagcg
ctgcgtaaaggcgatgaagatcgtattctgcctgcggtcaatcagggcgatgaactgtcg
ttgatcgacatcgttcctgcacagcactttaccaagccgccggcacgctttagcgaagcg
tcgctggttaaagaactggaaaaacgcggtatcggtcgtccgtccacgtatgcctctatt
atttccaccatccaggatcgtggctatgtgcgggttgaaagccgccgtttctacgccgag
aaaatgggtgagattgttaccgaccgtctgaaagataatttccgcgagctgatgaatttc
gatttcaccgcgcaaatggaagaccggctcgatcaggtcgcccgccacgaagccgaatgg
cagaaggtgctggatatcttttttgccgagttcagcgaacagcttcagactgccgagaaa
gatccggctgaaggcggaatgcagcctaatcagatggtgctgaccagcatcgactgtccg
acctgcggtcgcaaaatgggtattcgtaccgccagcaccggcgttttccttggctgctcc
ggttatgcgctatcgccaaaagagcgctgcaaaaccactattaacctggtgccggaaaac
gaagttctcaacgtgctggaaggtgacgacgcggaaaccaacgcgctgcgtgctaaacat
cgttgccagaaatgcggcaccgcgatggacagctacctgatcgatccgaaacgcaaactt
cacgtatgcggtaacaacccgacctgcgacggttatgaaatcgaagagggcgagttccgc
atcaaggggtatgacggtccgattgttgagtgtgaaaaatgtggatctgaaatgcacctg
aaaatggggcgtttcggcaaatacatggcctgcaccaacgaagagtgtaagaacacgcgt
aagatcctgcgtaacggtgaagtggctccgccgaaggaagatccggtaccgctgccggag
ctgccgtgcgaaaaatcggacgcgtattttgttctgcgtgacggtgcggctggcgtcttc
ctcgcggctaacaccttcccgaaatcacgcgaaacgcgtgcgccgctggtggaagagctg
taccgcttccgcgatcgtatgccggagaagctgcgttatctggccgatgcgccgcagcag
gatcctgaaggcaacaaaacggtcgtccgtttcagccgtaagactaaacaacagtatgtt
gcagcagaaaaagagggtaaagcgaccggctggtcggcctttttcatcgacggtaagtgg
gtagaaggtaagaagtaa
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