Superficieibacter sp. HKU1: P0H77_10165
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Entry
P0H77_10165 CDS
T08896
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
supe
Superficieibacter sp. HKU1
Brite
KEGG Orthology (KO) [BR:
supe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
supe03016
]
P0H77_10165
Enzymes [BR:
supe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
P0H77_10165
Transfer RNA biogenesis [BR:
supe03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
P0H77_10165
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
WES70307
LinkDB
All DBs
Position
complement(2132220..2134154)
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AA seq
644 aa
AA seq
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MLQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRV
IAVIHSEKDRENAEPEELVEPFLTRFVGKVQKKDDRLSIIPDHPLLKDAIPCRAERGVAH
DFQNGDWAVAEMRRHPLKGDRSFYAELTQFITFGDDHFVPWWVTLARHNLEKDAPQGSAT
EIMDEGLERHDLTALDFVTIDSASTEDMDDALYAEALADGKLQLTVAIADPTAWIAEGSK
LDEAAKVRAFTNYLPGFNIPMLPRELSDNLCSLRPHEVRPVLACRMIVNAEGAIEDDIEF
FAATIESKAKLAYDNVSDWLESKGSWQPPGEGIAGQITLLNQICLKRGEWRHNHALVFKD
RPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGIYNVHTGFD
PANGEQLAALLKTHGMHVDTEEVLTLEGFCKLRRELDAQPTGFLDSRIRRFQSYAEISVE
PGPHFGLGLDAYATWTSPIRKYGDMINHRLLKAVIKGASVDRPQADVTVQMAERRRLNRM
AERDVGDWLYARFLKDSAGTNTRFAAEIIDISRGGMRVRLVDNGAVAFIPAPFLHAVRDE
LVCSQENGTVQIKGEVVFKVTEVIDVTIAEVRLETRSVIARPAV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaggataacccgctgctcgcgcagcttaaacagcaactacattcccagaccccg
cgtgctgaaggggtcgttaaagccacggaaaagggctttggcttcctcgaagtcgacgcg
caaaaaagctactttattccgccgccgcagatgaaaaaagtcatgcacggcgaccgtgtt
attgccgttattcatagtgaaaaagatcgtgaaaacgcggagccggaagagcttgttgag
ccttttctgacccgcttcgtcggcaaagttcagaagaaagatgaccgtctttctattatt
cccgatcatcccctgctgaaagatgcgattccgtgtcgcgccgaacgcggcgtggcgcac
gattttcagaatggcgactgggctgtggccgagatgcgccgccatccgcttaagggcgac
cgcagtttctatgccgaactgacgcagtttattacctttggtgacgatcatttcgttccg
tggtgggtcaccctggcgcgccataatctggaaaaagacgcgccgcaaggcagcgccact
gaaataatggacgaaggtcttgagcgccatgatttaaccgcgctggacttcgtgaccatc
gacagtgccagcaccgaagatatggacgatgcgttatatgcggaagcgctggctgacggc
aagctgcaattaaccgtggcgatagccgatccgacggcctggatcgccgaaggcagtaaa
ctggatgaagccgctaaagtgcgcgcatttaccaactacctgccgggctttaatattccg
atgctgccccgtgaactgtcggataatctctgctccctgcgcccacacgaagttcgtccg
gtgctggcctgccggatgatcgttaatgcagagggcgccattgaagatgacattgaattc
ttcgcggcaaccatcgaatccaaagcaaagctggcctatgacaatgtctccgactggctg
gaaagtaaaggcagctggcagccgccgggtgaaggtattgccgggcaaattaccctgtta
aaccagatttgcctgaaacgcggcgaatggcgtcacaaccatgcgctggtgtttaaagat
cgtccggattatcgctttgtgctgggcgagaaaggtgaagtgctggatatcgtggccgag
cctcgccgtattgccaaccgcattgttgaagagtcgatgattgccgccaacatctgcgcc
gcccgcgtgctgcgtgataagctcggctttggtatctacaacgttcataccggtttcgat
ccggcgaacggcgagcagcttgctgccctgctgaaaacgcacggtatgcatgtagatacc
gaggaagtgctgaccctggaaggcttctgcaagctgcgtcgcgagctggacgcccagcca
accggcttcctcgacagccgtattcgtcgcttccagtcttacgcggaaatcagcgtcgaa
ccgggccctcattttggtctcggcctcgatgcctatgccacctggacctcaccgattcgt
aagtatggcgatatgatcaaccatcgcctgctgaaagcggtaatcaaaggcgcatccgtt
gaccgcccgcaagcggatgttaccgtacagatggcggaacgccgtcgtctgaaccgcatg
gcagaacgcgatgtcggcgactggctgtatgcccgcttcctgaaggatagcgccgggacg
aatactcgctttgccgcagagatcatcgatatcagccgtggcggtatgcgcgtgcgtctg
gtggataacggcgcggtcgcgtttattccggcaccgttcctgcatgccgtgcgtgacgaa
ctggtttgcagccaggaaaacggcaccgtgcaaatcaaaggtgaagtggtctttaaagtc
accgaggtcattgacgtgaccatcgctgaagtccgtctggaaacccgcagcgttatcgcg
cgtccagccgtctga
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