Superficieibacter sp. HKU1: P0H77_12620
Help
Entry
P0H77_12620 CDS
T08896
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
supe
Superficieibacter sp. HKU1
Brite
KEGG Orthology (KO) [BR:
supe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
supe03016
]
P0H77_12620 (rnd)
Enzymes [BR:
supe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
P0H77_12620 (rnd)
Transfer RNA biogenesis [BR:
supe03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
P0H77_12620 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Sfi1
Motif
Other DBs
NCBI-ProteinID:
WES70672
LinkDB
All DBs
Position
complement(2623778..2624896)
Genome browser
AA seq
372 aa
AA seq
DB search
MITTNDALLALCEEARNAPAIALDTEFVRTRTYYPQLGLLQLFDGQRVALIDPLGITDWS
PMRALLQNNEVIKYLHAGSEDLEVFLNEFGVMPQPFIDTQILASFCGRPGSWGFAAMVEE
FTGLKLDKSESRTDWLARPLTERQCDYAAADVWYLLPVAHQLLAETDRAGWLSAALDECE
LMKNRRQDILEPDDAWRDITNAWQLRPRQLACLQLLAAWRLRKARDRDMAVNFVVREEHL
WAVARYMPGSLGELDGLGLSGSEIRFHGKTLLSLVEKAQAMAEETLPEPLLNLMDMPGYR
KVFKDIKTIVQDISVAKGLSAELLASRRQINQLLNWHWKLKTSALLPELISGWRGELMSE
PLLALLAEYPRS
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccaccaatgacgcgctactcgccctgtgtgaagaggcgcgcaatgccccggct
atcgcgctggacaccgagtttgtgcgtacgcgtacctactatccgcagctgggtttactt
cagctgtttgatggacagcgcgtggcgttgatcgacccgctcggcattaccgactggtcg
ccgatgcgggcgctattacagaacaatgaagtgattaaataccttcacgcgggcagcgaa
gatctggaagtctttctcaatgaatttggcgtgatgccgcagccgttcatcgatacgcag
atcctggcgtcattttgtggccgtcctggatcgtggggctttgccgccatggttgaagaa
tttaccggtctgaagctggataaaagcgagtcgcgcaccgactggctggcccgtccgcta
accgagcgccagtgtgattacgcggcggctgacgtctggtatttactgcctgtcgcccat
cagctgctggccgaaaccgaccgcgcgggctggctgtccgccgcgctggacgaatgtgaa
ttgatgaaaaaccgccgtcaggatattctcgaacccgacgacgcgtggcgtgacattact
aatgcctggcagttgcgtcctcgtcagctggcctgcctgcaactgctggcggcgtggcgt
ttacgtaaagcgcgggaccgtgatatggcggttaatttcgtggttcgtgaagaacacctg
tgggccgtggcgcgctatatgccaggcagtctcggcgagctggacggcctgggtctgtca
ggcagcgaaattcgcttccacggcaaaacgctgctgagcctggtggaaaaagcgcaggct
atggcggaagagacgctgccggagccgctcctgaacctgatggacatgcccggttaccgc
aaagtcttcaaagacattaagacaattgttcaggacattagcgtggccaaagggcttagc
gctgagctgctggcgtcccgtcgtcagattaaccagttacttaactggcactggaaactt
aaaacgtcggcgttattacctgaactgatttctggctggcgtggggaactgatgagcgag
ccattgctggcgctgctggcggagtatccgcgtagttaa
DBGET
integrated database retrieval system
