Superficieibacter sp. HKU1: P0H77_16065
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Entry
P0H77_16065 CDS
T08896
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
supe
Superficieibacter sp. HKU1
Brite
KEGG Orthology (KO) [BR:
supe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
supe03009
]
P0H77_16065 (srmB)
Enzymes [BR:
supe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P0H77_16065 (srmB)
Ribosome biogenesis [BR:
supe03009
]
Prokaryotic type
rRNA helicases
P0H77_16065 (srmB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
UvrD-helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WES67146
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All DBs
Position
3380968..3382305
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AA seq
445 aa
AA seq
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MTVTTFSELELDDSLLDALQEKGFTRPTAIQAAAIPPALEGRDVLGCAPTGTGKTAAFLL
PALQHLIDFPRKKSGPPRILILTPTRELAMQVADHARELAKNTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLMQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTLLFSATLEGDEAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADDVEHKTALL
VHLLKQPEATRSIVFVRKRERVHELANWLRSAGINNCYLEGEMVQIKRNEAIKRLTDGRV
NVLVATDVAARGIDIPDVSHVFNFDMPRSGDAYLHRIGRTGRAGRKGTAISLVEAHDHLL
LGKASRYIDEPLKARVIDELRPTTRAPSEKSTGKPSKKVLAKRAEKKEKEKEKPRVKKRH
RDTKNIGKRRKPSAEAAPQTESSEK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaacgactttttccgaactcgaacttgacgatagcctgctggatgcactccag
gagaaaggcttcacgcgcccgaccgccattcaggctgccgcaattccgcctgcgctggag
ggccgtgatgtcctcggttgtgcaccgacaggcaccggtaaaacggcggcatttttgctg
ccggcgttgcagcacctgatcgacttcccgcgtaaaaaatctggcccgccgcgtatcctg
atccttacgccaacgcgtgaactggcgatgcaggttgcggaccatgcccgtgaactggca
aaaaatacgcatctggatatcgccacgattaccggcggcgtggcgtatatgaatcacgcg
gaagttttcagtgagaatcaggatatcgtggttgccaccaccggtcgcctgatgcagtac
attaaagaagagaattttgactgccgtgcggtcgagacgctgatccttgatgaagccgac
cgcatgctggatatgggctttgcccaggatattgagcatattgctggtgaaacccgctgg
cgtaaacaaacgctgctgttctccgctacgctcgaaggcgatgaggcaatcaaagatttt
gccgagcgtttgctggaagatccggtagaagtttcagccaccccgtccacccgcgagcgt
aaaaagatccatcagtggtattaccgcgctgatgatgttgagcataaaactgccctgctg
gttcacctgctgaagcagcctgaggccacgcgctctatcgtcttcgtgcgtaaacgcgag
cgagtgcatgaactggcaaactggctgcgttccgcgggcatcaataactgttatctcgaa
ggcgagatggtgcagattaaacgtaacgaagccatcaagcgtctgaccgatggccgggtc
aacgtgctggttgctaccgatgtcgccgctcgcgggatcgacattcctgacgtcagccac
gtctttaactttgatatgccgcgcagcggcgatgcctacctgcaccgtattggccgtacc
ggccgcgccgggcgtaaagggacggccatttcgctggtcgaagcgcacgatcatttgcta
ctcggtaaagcgagtcgctatatcgatgagccactgaaagcccgtgtgattgatgagctg
cgtccgacgacccgtgcgccgagtgaaaaatcgaccggtaaaccgtcgaaaaaagtgctg
gctaaacgtgcagagaagaaagagaaagaaaaagagaagccgcgcgtgaaaaaacgtcac
cgcgataccaaaaacatcggtaagcgacgcaagccgagtgctgaggccgcgccgcagaca
gaatcttcagagaaataa
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