Superficieibacter sp. HKU1: P0H77_19260
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Entry
P0H77_19260 CDS
T08896
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
supe
Superficieibacter sp. HKU1
Pathway
supe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
supe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
P0H77_19260 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
supe03021
]
P0H77_19260 (rpoD)
Transcription machinery [BR:
supe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
P0H77_19260 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
D27-like_C
Motif
Other DBs
NCBI-ProteinID:
WES67723
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Position
4051223..4053064
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AA seq
613 aa
AA seq
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MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA
THVGSELSSEEMDDEDEDEEEDDDSSDDDNSIDPELAREKFAELRTQYIVTRDTIKAKGR
SNAASQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKMCVEQCKMPKK
NFITLFTGNETSETWFNAAIAMNKPWSEKLHDVSDEVHRSLQKLHLIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaacgaccatctgccggaagatatcgtcgactcagatcag
atcgaagacatcatccagatgattaacgatatgggtattcaggtgatggaagaagcaccg
gatgccgacgatctgttgcttgctgaaaactcaaacaatactgacgaagatgcggaagaa
gcggctgcgcaggttctttccagcgttgaatccgaaatcgggcgcaccactgacccggtc
cgcatgtacatgcgtgaaatgggtaccgttgaacttctgacccgtgaaggcgaaattgac
atcgccaagcgtattgaagacggtatcaaccaggttcagtgctccgttgctgaatatccg
gaagcgatcacctatctgctggagcagtacgatcgcgttgaagcggaagaggctcgcctt
tccgatctgattaccggttttgtcgatccgaacgctgaggaagatctggctccgacggca
acgcacgtcggctctgaactttccagcgaagaaatggatgacgaagacgaagacgaggaa
gaagacgacgacagcagcgacgacgataacagcatcgatcctgagctggcgcgcgagaaa
ttcgctgaactgcgcacgcagtacattgtcacccgcgacaccattaaggcaaaaggccgc
agcaacgccgcgtcacaggaagagatcctgaaactgtctgaagtctttaaacagttccgc
ctggtgccaaaacagttcgattacctggttaacagtatgcgcgtcatgatggatcgcgtg
cgtacccaggaacgtctcatcatgaagatgtgcgtcgaacagtgcaaaatgccgaagaaa
aacttcatcaccctgttcaccggcaatgaaaccagcgaaacctggttcaacgcggctatc
gcgatgaacaagccgtggtctgagaagctgcacgatgtctctgatgaagtgcatcgcagc
ctgcaaaaactgcatctgattgaagaagagaccggcctgaccatcgagcaggtgaaagac
atcaaccgtcgcatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagagatggtt
gaagcgaacttacgtctggttatttctatcgcgaaaaaatacaccaaccgtggcctgcaa
ttcctcgatctgatccaggaaggcaacatcggtctgatgaaagcggtcgataagtttgaa
tatcgtcgtggttacaagttctccacctacgcaacatggtggatccgtcaggcgatcacc
cgctctatcgcggaccaggcgcgcaccatccgtattccggtgcatatgattgagaccatc
aacaagctcaaccgtatttctcgccagatgctgcaagagatgggccgtgagccgacgccg
gaagagctggccgaacgcatgctgatgccggaagacaaaatccgtaaagtgctgaaaatc
gccaaagagcctatctccatggaaacgccgatcggcgacgatgaagattcgcatctgggt
gatttcatcgaggataccaccctcgagctgccgctggattctgcaactaccgagagcctg
cgtgccgccacgcacgatgtgctggctggcctgaccgcccgtgaagcgaaagtcctgcgt
atgcgtttcggtatcgatatgaacaccgatcacacgctggaagaagtgggtaaacagttt
gacgttacccgcgaacgtatccgtcagatcgaagccaaggcgctgcgtaaactgcgccac
ccgagccgttctgaagtgctgcgtagcttcctcgacgattaa
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