Stigmatella aurantiaca: STAUR_2281
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Entry
STAUR_2281 CDS
T01425
Name
(GenBank) Metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sur
Stigmatella aurantiaca
Pathway
sur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STAUR_2281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sur03019
]
STAUR_2281
Messenger RNA biogenesis [BR:
sur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STAUR_2281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ADO70085
UniProt:
E3FDK6
LinkDB
All DBs
Position
complement(2802877..2804517)
Genome browser
AA seq
546 aa
AA seq
DB search
MLHVIPLGGLGEIGLNAMVLACRGEMLLIDAGLMFPTVEAPGIDIVIPDFSHLKQHASQF
RGIVLTHGHEDHMGALPYLLDDLPVPVYGTRYTLAMARNRLDELGVIADLREIEPRTPFP
VGSVFTVEASRVTHTVPDAVGYIVRTPEGTVIHTGDFKLDPDPIDGLRTDLERWGEEGER
GVLCLLSDSTNSEVTQETGSERVVEHAFERLFREAQGRIVVALFASNLHRVRTVLKLAEQ
LGRRVALQGRSMTRNVEMARQLGYLDVPESLFIPLEAVPSLAPGRVVLLSTGAQGEARAG
LAQLAAGKGPVRLGPGDMVVLSARPIPGNERSVGALLDQLQWTGARLVYAQVEPDIHVSG
HASQPQQRRVLDLVRPQHFIPVHGEMRHLHRHLATARESGLTPEQLLLARDGDLISFEEG
RGRFAGQVPTGRIHKDLYSGGVVTPEALQERTRLAETGMVVAVAVIDRASLALMAGPQLS
GQGLSLDEQAMLPRVAEEARTLFLQLSPQLRGDDALVREELTRSVRRAFKLFTPKRPLVV
PMVVKV
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgcttcatgtgattccgttgggcgggttgggtgagattggcctcaatgcgatggtgctc
gcgtgccgcggagagatgctgctcatcgatgcgggcttgatgttccccaccgtggaggct
cccggcatcgacatcgtcattccggacttcagccacctgaagcagcacgcctcgcagttc
cggggcatcgtcctcacgcacgggcacgaggaccacatgggcgcgctgccctacctcttg
gatgacctgcccgtgcccgtctacggcacgcgatacaccctcgccatggcccgcaaccgg
ctggatgagctgggcgtcatcgccgacctgcgggaaatcgagccccggacccccttcccc
gtcggctcggtcttcacggtggaggccagccgcgtcacccacaccgtgcctgacgcggtg
ggctacatcgtccggacccccgaggggaccgtcatccacaccggcgatttcaagctggac
cccgaccccatcgatggcctgcgcacggacctcgagcgctggggggaggagggagagcgg
ggcgtgctgtgcctcctgtcggactccaccaactcggaggtcacccaggagacgggcagc
gagcgtgtcgtggagcacgccttcgagcggctctttcgcgaggcccagggccgcatcgtc
gtggcgctcttcgcctccaacctgcaccgcgtccgcaccgtgctgaagctggccgagcag
ctggggcgccgggtggccctccagggccgcagcatgacgcgcaacgtggagatggcgcgg
cagctcggctacctcgacgtgcccgagtccctcttcatccccctggaggccgtccccagc
ctggccccgggccgggttgtcttgctctccacgggtgcgcagggcgaggcccgcgcgggg
ctcgcgcagctcgccgccggcaaggggcccgtgaggctgggccccggggacatggtcgtc
ctgagcgcccggcccatccccggcaacgagcgctccgtgggagcgctcctggatcagctc
cagtggacgggggcacgcctcgtctatgcccaggtggagcccgacatccacgtctccggg
cacgccagccagccacagcagcgccgcgtcctggaccttgtccgtccccagcacttcatc
cccgtccacggggagatgcgccacctccaccgccacctggccacggcgcgcgagtcaggg
cttacccccgagcagctcctgctggcccgggatggggacctcatctccttcgaggaaggc
cggggccgcttcgccggccaggtgcccacgggccgcatccacaaagacctctacagcggg
ggggtggtgacgcccgaggcgctccaggaacgcacccggctggccgagaccggcatggtg
gtggccgtggccgtcatcgaccgcgcctccctggcgttgatggcgggcccccagctctcc
ggccaggggctttccctcgatgaacaggcgatgctgccccgggtggccgaggaggcccgc
accctgtttctccagctctccccacagctgcgcggggacgacgccctggtgagagaggaa
ctgacccgctcggtccgccgcgccttcaagctgttcacccccaagcgccccctggtggtg
cccatggtcgtcaaggtgtga
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