Stigmatella aurantiaca: STAUR_2808
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Entry
STAUR_2808 CDS
T01425
Name
(GenBank) ATP-dependent DNA helicase, UvrD/REP family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sur
Stigmatella aurantiaca
Pathway
sur03420
Nucleotide excision repair
sur03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STAUR_2808
03430 Mismatch repair
STAUR_2808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sur03400
]
STAUR_2808
Enzymes [BR:
sur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STAUR_2808
DNA repair and recombination proteins [BR:
sur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STAUR_2808
MMR (mismatch excision repair)
Other MMR factors
STAUR_2808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADO70606
UniProt:
Q08VJ0
LinkDB
All DBs
Position
3397737..3399803
Genome browser
AA seq
688 aa
AA seq
DB search
MDLSKLNPPQREAVITTEGPLLVLAGAGSGKTRVITHRIVHILNERPGGALARNILAVTF
TNKAATEMKERLVKMAGPRAQGVLVCTFHAFGAEMLREDIHRLGWPRKFAIADMGDQLAL
IRRAMRDHKVDDRAFDARKVLTLISKAKNSGHEPTPKPEGMGDDYDLITHLVYPNYQLAL
KAQGSVDFDDLLLLPARLLREHEDLSTKYTRRFRYLLVDEFQDTNLAQMNLLRLLAGKVR
NVCAVGDDDQAIYSWRGAEVRNILQFDSHFPGSREVRLEQNYRSMQVVLDAANAVIAKNP
ERKAKRMWTDRLGGERVKVVTCPNEEEEARFVAHEIQKQMALGVAADDIAVLYRTNGQSR
PVEEMLREKGIGYEVVGGSEFFDRREVKDVIAYFKVIANPRDEVSLLRIVNVPARGIGDV
TMERLHAHARADGISLWAAMGRSQGYEDLPAGAAEKVGEFLQLIERYRGLFEEGRLAQVT
RQLLEEIGFREATRALAPSISSADKKLKSVDHVLNSLESFEKREGPKASLLTYLNRLSLD
TRQEEEEVPGGHRRVTLMTVHASKGLEYRLVFFIGMEEDLMPHKGMQGEPQNLEEERRLC
YVGITRAKELLYLTRAAIRVKRGKEVPCTPSRFLEDLPPEVVEKVDLAAPRTGAPTEQER
NFFANLKDRFKPKGAGGGAGPTPGDRKV
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggacctctccaagctcaaccccccccagcgtgaggccgtcatcacgacggagggcccg
ctcctggtgctggcgggcgcgggcagcgggaaaacccgcgtcatcacccaccgcatcgtt
cacatcctgaacgagcggccgggaggggcgctggcccgcaacatcctcgccgtcaccttc
acgaataaggccgccaccgagatgaaggagcggctggtgaagatggcgggtccccgcgca
caaggggtcctggtgtgcaccttccacgcctttggcgcggagatgctccgggaggacatc
caccggctgggctggccgcggaagttcgccatcgcggacatgggcgaccagctggcgctc
atccgccgggccatgcgcgaccacaaggtggacgaccgggccttcgacgcccgcaaggtg
ctcaccctcatctccaaggcgaagaactcgggccacgagccgacccccaagcccgagggc
atgggggacgattatgatctcatcacccacctcgtctatccgaactaccagttggccctg
aaggcgcagggctcggtggacttcgatgacctgctgctgctgcccgcgcgcctgctgcgc
gagcacgaggacttgagcaccaagtacacccggcgcttccgctacctgctggtggacgag
ttccaggacacgaacctggcgcagatgaacctgctgcggctgctcgcgggcaaggtgcgc
aacgtgtgcgcggtgggggacgacgaccaggccatctacagctggcggggcgcggaggtg
cgcaacatcctccagttcgacagccactttccgggcagccgcgaggtgcggctggagcag
aactaccgctccatgcaggtggtgctggatgcggccaatgcggtcatcgccaagaacccc
gagcgcaaggccaagcgcatgtggaccgaccgcctggggggcgagcgcgtcaaggtcgtg
acgtgccccaacgaggaggaggaggcgcgcttcgtcgcgcacgagattcagaagcagatg
gcgctgggcgtcgccgcggatgacatcgcggtgctctaccgcaccaacggccagtcccgc
ccggtggaggagatgctgcgcgagaagggcattggctacgaggtggtgggcggcagcgag
ttcttcgaccggcgcgaggtgaaggacgtcatcgcctacttcaaggtgatcgccaacccg
agggacgaggtgagcctcttgcgcatcgtcaacgtgccggcgcgcgggattggcgacgtg
acgatggagcggttgcacgcgcacgcccgggcggacggcatctcgctgtgggcggccatg
gggcgcagccagggctacgaggatctgcccgcgggggcggccgagaaggtgggggagttt
ctccagctcatcgagcggtaccggggcctgtttgaagaggggcggctggcccaggtgacg
cgccaactgctggaggagatcggcttccgcgaggccacgcgcgccctggccccctcgatc
agctcggcggacaagaagctgaagtccgtggaccatgtgctcaactcgctggagtccttc
gagaagcgggaggggcccaaggcgagcctcctcacctacctcaaccggctgagcctcgac
acccggcaggaggaggaagaggttcccggtggccaccggcgcgtcaccctgatgacggtg
catgcctccaaggggctggagtaccggctcgtcttcttcatcggcatggaagaagacctg
atgccccacaagggcatgcagggcgagccccagaacctcgaggaggagcggcggctctgt
tacgtgggcatcacccgggccaaggaactgctctacctgacccgggccgcgatccgggtg
aagcgcggcaaggaggtcccctgcaccccctcccggttcctggaggatctgcctccagaa
gtcgtggaaaaggtggatttggcagcaccccggaccggcgctcccaccgagcaggaacgc
aacttctttgccaacttgaaggatcgcttcaaacccaagggggcaggcgggggggcaggg
cctacaccgggtgatcgcaaggtttga
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