Stigmatella aurantiaca: STAUR_2989
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Entry
STAUR_2989 CDS
T01425
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sur
Stigmatella aurantiaca
Pathway
sur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STAUR_2989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sur03019
]
STAUR_2989
Enzymes [BR:
sur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STAUR_2989
Messenger RNA biogenesis [BR:
sur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STAUR_2989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ADO70781
UniProt:
Q090J1
LinkDB
All DBs
Position
complement(3613023..3614513)
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AA seq
496 aa
AA seq
DB search
MTFDELKLSEPLLRAVKAEGYTTPTPIQQRAIPPALTGQDVLGCAQTGTGKTAAFALPIL
HRLSAGRSPPPAQGRPIRVLVLTPTRELASQIADSFQAYGRFTGLSWAVIFGGVGQHAQE
QTLRRGVDVLIATPGRLLDLMGQGLVSYKALEVFVLDEADRMLDMGFIHDVKRIISALPP
KRQTLFFSATMPPEIQSLAQGILKSPVRVEVTPESTTAETVEQKMFFVEREQKRHLLVHL
LGDASIRRALVFTRTKHGANRVAKHLASSRISAEAIHGNKSQNARERALGAFKDGSCRVL
VATDIAARGIDIEGITHVINFDLPNIPESYVHRIGRTGRAGAVGTALSFCDGEERAYLRD
IERTIRRQVPVMADHPFRSGQSAPVPSEPGEARPRPSNEGRRHNSGGQRSQGESQGEGRH
RRRRGGRPGGQGASARSSEGHRGSGGRSSEGSSRGPGGRSSEGHRGSGGRAAAAPATAPA
ASRPTPPPVRTAPKWL
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgatgaactgaagctctccgagccgctgcttcgcgccgtgaaggccgagggc
tacaccacgcccacccctatccagcagcgggccatccctcccgcgctcaccggacaggac
gtgctgggctgcgcccagacgggcacgggcaagaccgcggcgttcgcgctgcccatcctc
caccggctgtcggcaggccgctcccctccccccgcgcagggccgccccatccgcgtgctc
gtcctcacccccacgcgcgagctggccagccagatcgccgacagcttccaggcgtatggc
cgcttcaccggcctgtcctgggcggtcatcttcggcggcgtgggccagcatgcccaggag
cagacgctgcgccggggcgtggatgtgctcatcgccaccccgggccggttgctggacctg
atgggccaggggctcgtctcgtacaaggcgctggaagtgttcgtgctcgatgaggcggac
cgcatgctggacatgggcttcatccacgacgtgaagcgcatcatctcggcgctgcccccc
aagcggcagacgctcttcttctcggcgacgatgccgccggagattcagtccctggcgcag
ggcatcctgaagagccccgtgcgcgtggaagtcaccccggagtccaccaccgcggagacg
gtggagcagaagatgttcttcgtggagcgcgagcagaagcggcacctcttggtgcacctg
ctgggcgacgcgtccatccggcgcgccctggtcttcacccgcaccaagcacggcgccaac
cgggtggccaagcacctggcgtcctcgcgcatcagcgccgaggccatccacggcaacaag
agccagaacgcccgcgagcgggccctgggtgccttcaaggatgggagctgccgggtcctg
gtcgccacggacatcgccgcgcggggcatcgacatcgagggcatcacccacgtcatcaac
ttcgacttgcccaacatccccgagtcctacgtgcaccgcattggccgcaccggccgcgcg
ggcgcggtgggcaccgccctgtccttctgcgacggggaggagcgcgcctacctgcgggac
atcgagcgcaccatccggcgccaggtgccggtgatggccgaccatccgttccgctccggc
cagtccgcccccgtgccctccgagccgggagaagcgcgtccccggccctcgaacgaggga
cggcggcacaactccggcggccagcgttcccagggcgaatcgcagggtgagggtcgccac
cggcgccgccggggaggccgtccaggaggccagggcgccagcgcccgctcgtccgagggc
caccggggctctggcggacgctcgtccgagggctcctcccgcggtccagggggccggtcc
tccgaggggcaccggggctcgggcggacgcgccgccgcggcacccgccaccgctccggcg
gcttcccggccaacgccgccaccggttcgcaccgctccgaagtggctctga
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