Stigmatella aurantiaca: STAUR_3997
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Entry
STAUR_3997 CDS
T01425
Name
(GenBank) ATP-dependent DNA helicase, UvrD/REP family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sur
Stigmatella aurantiaca
Pathway
sur03420
Nucleotide excision repair
sur03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STAUR_3997
03430 Mismatch repair
STAUR_3997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sur03400
]
STAUR_3997
Enzymes [BR:
sur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STAUR_3997
DNA repair and recombination proteins [BR:
sur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STAUR_3997
MMR (mismatch excision repair)
Other MMR factors
STAUR_3997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
CCDC24
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
ADO71785
UniProt:
Q08TX4
LinkDB
All DBs
Position
4813038..4815116
Genome browser
AA seq
692 aa
AA seq
DB search
MATRTYTLKVTQAKPRLRIDYAALLNEEQLRAVEAGEGPALVIAGAGTGKTRTLTFRVAR
LLERGIPPEGVLLLTFTNKAAREMTRRVEELAGGFVDVRRILGGTFHHAAHALLRQFAPT
LGFATSFTVLDREDARDLMASCVSERKISRERRFPRAEVVLDMVSTAINLQKPLAEVLVD
RRPQFLPLAEEVLAVGQRFQQRKQQMNLMDFDDLLLHLKRLLAEHPAVRAQLVERFQCVL
VDEYQDTNRLQGDLVDLLVGERKNLTVVGDDCQSIYSFRGADFTNIIDFPQRYPGCGVYP
LTRNYRSTPQILALANASIALNQRQFHKQLTASRQPGVPPVVVPTRDTDEQATFVAQRIL
ELREEGLPLEEMAVLYRAHSHSLELQIELTRRGIPFRVRSGVRFFEQAHIKDVLAHLRLV
HNPGDELAFKRVVKLVSGVGQATAEALWTALGALPEAASLKDALRHPDVSAQVPRRASAG
FARFAALMTRLTREDAARTPGQLIEDVLRGGYGEYLRDEFGADGRREEDIRQLAEYAGRF
EDLPRFLSEIALISEFSAEEAVETEAPDEFLTLSTVHQAKGLEWGAVFVIWLAEGRFPMV
NAARDEAEEEEERRLFYVAVTRAKDELALTYPLTTNPQDGTRIIVRQSRFIEELPVGEEA
PYDRLILEELETPELPRLEGGKAPKPGPDALD
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggccacgcgcacctacacgctcaaggtcactcaggccaagccccgcctgcggatcgac
tatgcggcgctcctcaacgaggagcagctccgggcggtcgaagcaggggaggggcccgcg
ctggtcatcgctggggcggggacgggcaagacgcgcacgctgacgttccgggtggcgcgg
ctgctggagcgggggatccctcccgagggggtgctgttgctcaccttcaccaacaaggcg
gcccgggagatgacacggcgggtggaggagctggccggggggttcgtggacgtgcgccgg
attctcggtggcaccttccaccacgcggcccacgccctgctgcgccagttcgcccccacg
ctggggtttgccacctctttcacggtcctggaccgggaggatgccagggatctgatggcc
tcgtgtgtctccgagcggaagatctcccgcgagcggcgcttcccgcgcgccgaggtggtc
ctggacatggtctccacggccatcaatctgcagaagccgctggcggaggtgctggtggac
cggcgtccgcagttcctgcccctggcggaggaggtgctggcggtggggcagcgcttccag
cagcgcaagcagcagatgaacctgatggacttcgacgatctgctgttgcacctcaagcgg
ttgctggccgagcaccccgcagtgcgcgcccagctcgtcgagcggttccagtgcgttctg
gtggacgaataccaggacaccaaccgcctccagggcgatctggtggacctgctcgtgggc
gagcgcaagaacctgacggtggtgggagacgactgccagtccatctacagcttccgggga
gcggacttcaccaacatcatcgatttcccgcagcgctatccgggctgcggcgtgtacccg
ctgacgcgcaactaccgctccacgccgcagatcctcgcgctggccaacgcctccatcgct
ctcaaccagcgccagtttcacaagcagctcactgcctcgcggcagcccggggtgcccccc
gtggtggttcccacccgggacacggacgagcaggccacgttcgtggcccagcgcatcctg
gaactgcgcgaggaggggctgccgctggaggagatggcggtgctctaccgggcccacagc
cactcgctggaactccagatcgagttgacccggcggggcatccccttccgggtccgctct
ggggtgcgcttcttcgagcaggcccacatcaaggacgtgctcgcccacctgcgcctggtc
cacaaccccggagacgagctggccttcaaacgcgtggtcaagctcgtctccggggtcgga
caggccacggcggaagccctgtggacggcgctgggggccctgcccgaggcggcctctctc
aaggatgcgctgcgccacccggacgtgagcgcccaggtgccccgccgggcctcggcggga
tttgcccgcttcgcggccctgatgacccggctcacgcgggaggatgcggcccggaccccg
ggccagctcatcgaggatgtgttgaggggagggtacggggagtacctccgggacgagttc
ggagccgatgggcgccgggaggaggacatccgccagctggcggagtacgccgggcggttc
gaggatctgccccgcttcctgtcggaaattgccctgatttccgagttctccgccgaggaa
gcggtcgagacggaagcgccggacgagttcctgacgctgtccacggtgcaccaggccaag
gggctggagtggggggcggtcttcgtgatctggctggcggaggggcgctttccgatggtg
aatgccgcccgggacgaggcggaagaggaggaggagcggcgcctcttctacgtcgcggtg
acccgggccaaggacgagctggccttgacctacccgctgacgaccaacccccaggacggg
acgcgcatcatcgtgaggcagtcccgcttcatcgaggagctgccggtgggagaagaggcg
ccctacgaccggctcatcctcgaggagctggagacgccggagcttccccgcctggaggga
gggaaggcccccaagccgggaccggatgccctggactag
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