Stigmatella aurantiaca: STAUR_4084
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Entry
STAUR_4084 CDS
T01425
Name
(GenBank) Type I topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sur
Stigmatella aurantiaca
Brite
KEGG Orthology (KO) [BR:
sur00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sur03032
]
STAUR_4084
03400 DNA repair and recombination proteins [BR:
sur03400
]
STAUR_4084
Enzymes [BR:
sur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
STAUR_4084
DNA replication proteins [BR:
sur03032
]
Prokaryotic type
DNA Topoisomerases
STAUR_4084
DNA repair and recombination proteins [BR:
sur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
STAUR_4084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Disulph_isomer
Motif
Other DBs
NCBI-ProteinID:
ADO71868
UniProt:
E3FMT7
LinkDB
All DBs
Position
complement(4943645..4944676)
Genome browser
AA seq
343 aa
AA seq
DB search
MTHLERLQREGIHRKGTAKRGFRYLHADGHPVSRTERDRIDTLRLPPAWTDVAISPSEKA
KLQAIGKDAAGRWQYRYSEAFTRQRQEAKYQRIVGFARALPKMRRRVNADLRRKGLGRDK
VMACILRILGTCFIRPGSQVYAEENGSFGLATLRARHVKVVGETVRFDFPGKSGQRQLRE
LKDRRVATLVRRLLKIRGRDVFKFLLDDGHVVDVRRRHINEYIQEVMGEEYSAKDFRTWG
GTLVCACALARARRRVKQAEAQSGVKATKKTMVAAVKEAAQQLGNTPAVAKASYIYPSVL
AMFEQGKVVERYFESVEELAKHDKPVLHCSEKALLEMIQEGAA
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgacgcacctcgaacggctccaacgcgaaggcattcaccggaagggcactgcgaagcgc
ggattccggtacctgcacgccgatgggcatcccgtttcccggaccgagcgtgaccgcatc
gacacattgcggctccccccggcctggacggatgtagccatttcaccctctgagaaagcg
aaactccaagccatcgggaaggatgccgcgggccgctggcagtaccgctacagcgaggcg
ttcacgcgccagcgccaggaggcgaagtaccagcgcatcgtgggcttcgcccgtgccctg
ccaaagatgcggcgccgggtgaacgcggatctccggcggaaggggctcggccgggacaag
gtgatggcgtgcatcctgcgcattctgggcacctgcttcatccggcccggcagccaggtc
tacgcggaggagaacgggagcttcggcctggccacgctccgggcgcggcacgtgaaggtg
gtgggagagaccgtgcgcttcgacttcccgggcaagagcggccaacggcagctgcgcgaa
ctcaaggaccggcgcgtggccaccctcgtgcggcggctcctgaagatccgcggccgggat
gtcttcaagttcctcctggacgatgggcacgtggtggacgtgcgccgccgccacatcaac
gagtacatccaagaggtgatgggggaagagtacagcgcgaaggacttccggacctggggc
gggacgttggtctgtgcctgcgcgctggcccgggcccggagacgggtgaaacaagccgag
gcccagagcggcgtgaaggcgacgaagaagaccatggtcgccgcggtgaaggaggccgcc
cagcagttgggcaacacgcccgcagtggccaaggcctcctacatctatccttccgtgctg
gcgatgttcgagcagggcaaggtcgtggagcggtacttcgagtccgtggaggagctggcg
aagcacgacaaacccgtcctgcactgctcggagaaagccctgctggagatgatccaggag
ggcgccgcttga
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