Allostigmatella aurantiaca: STAUR_6316
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Entry
STAUR_6316 CDS
T01425
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sur
Allostigmatella aurantiaca
Pathway
sur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STAUR_6316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sur03021
]
STAUR_6316
03019 Messenger RNA biogenesis [BR:
sur03019
]
STAUR_6316
Transcription machinery [BR:
sur03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
STAUR_6316
Messenger RNA biogenesis [BR:
sur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
STAUR_6316
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
S1CSD-TOTE-2
OB_RNB
Spore_III_AA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADO74073
UniProt:
E3FH43
LinkDB
All DBs
Position
complement(7753211..7754866)
Genome browser
AA seq
551 aa
AA seq
DB search
MPRRPPPQQRSPTMRKARSTKEKVETDPLPLEEERPKRRRTAAKASEREETEKPSRRRTR
RVDEEEAAPASASERAAETPRPVLTPIPRPVRDEEFQEARAVEAAEEPAATAASESAESP
AITEVTRDGAPMQVIKLNDLKRMKITELAKMAHDFGIEGYQGLKKQDLIFALLSGIADKR
FEVHAEGVLELLSDGFGFLRSADSDYQPSPDDIYVSPSQVRRFNLRPGDTVTGPIRQPRE
GERFFALQKVDKVNFADPMSEAARERILFDNLTPLYPTRKLKLEHEGSEMTTRIIDLFCP
IGLGQRCLIVAPPKAGKTVLLQNIAHAIAKNHPDVYLLVLLVDERPEEVTDMERNVRGEV
VSSTFDEPATRHVQVAEMVIDKAKRLVEQKYDVCILLDSITRLARAYNTVVPASGKILSG
GVDANALHKPKRFFGAARNIEEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLDR
KLFEKRIFPCLDINKSGTRKEELLISQTDLIRTTALRQVLHPFTPIDAMEFVLKHMRPTA
SNIEFLGSMNR
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgcccaggcgcccccccccccaacaacgcagcccaaccatgcgcaaagcccgttccacc
aaagaaaaggtcgagaccgatccgctcccccttgaggaggagcgccccaagcgccgccgt
acggcggccaaggccagtgagcgggaagagaccgagaaaccctcgcgccgccgcacccgc
cgcgtggatgaggaggaggctgccccggccagtgccagcgagcgcgccgccgagacgccc
cgccccgtgctgacgcccatcccgcgccccgtgcgcgatgaggagttccaagaagcgcgc
gccgtcgaggccgccgaggagcccgccgccacggcggcctccgagtccgccgagtccccc
gccatcaccgaggtgacgcgcgacggggccccgatgcaggtcatcaagctcaatgacctg
aagcggatgaagatcaccgagctggcgaagatggcccatgacttcggcatcgagggctac
cagggcctgaagaagcaggacctcatcttcgcgctgctgtcgggcatcgccgacaagcgc
ttcgaggtccacgccgagggcgtgctggagctgctcagcgacggctttggcttcctgcgc
agcgccgacagcgactaccagcccagcccggacgacatctacgtctccccctcgcaggtg
cgccgcttcaacctgcggccgggcgacacggtgaccggccccatccgccagccccgcgag
ggcgagcgcttcttcgcgctgcagaaggtggacaaggtcaacttcgccgaccccatgtcc
gaggcggcgcgcgagcgcatcctcttcgacaacctcacgccgctctaccccacgcgcaag
ctgaagctggagcacgaggggtcggagatgacgacccgcatcatcgatctgttctgcccc
atcggcctgggccagcgctgcctcatcgtggcgccgcccaaggcgggcaagacggtgctc
ctgcagaacatcgcgcacgccatcgccaagaaccacccggacgtgtacctgctggtgctg
ctcgtggacgagcgccccgaggaagtcacggacatggagcgcaacgtgcgcggcgaggtg
gtctcctccaccttcgacgagccggccacgcgccacgtgcaggtggcggagatggtcatc
gacaaggccaagcgcctcgtcgagcagaagtacgacgtgtgcatcctgctggactccatc
acccgtctggcgcgcgcctacaacacggtggtgcccgcctccgggaagatcctctccggt
ggcgtggacgccaacgcgctccacaagcccaagcgcttcttcggcgccgcgcgcaacatc
gaggagggtggcagcctcaccatcatcggcaccgcgctcgtcgacaccggcagccgcatg
gacgaggtcatcttcgaggagttcaagggcaccggtaactcggaaatcgtcctggaccgc
aagctcttcgagaagcgcatcttcccatgcctcgacatcaacaagtcgggcacgcgcaag
gaagagctgctcatctcccagacggacctcatccgcaccacggcgctgcggcaggtgctc
cacccgttcacgccgatcgacgcgatggagttcgtgctcaagcacatgcgccccaccgcc
tccaacatcgagttcctcgggtcgatgaaccgctag
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