Stigmatella aurantiaca: STAUR_6988
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Entry
STAUR_6988 CDS
T01425
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sur
Stigmatella aurantiaca
Pathway
sur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STAUR_6988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sur03400
]
STAUR_6988
Enzymes [BR:
sur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STAUR_6988
DNA repair and recombination proteins [BR:
sur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
STAUR_6988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
AAA_22
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADO74744
UniProt:
E3FW23
LinkDB
All DBs
Position
8537215..8540799
Genome browser
AA seq
1194 aa
AA seq
DB search
MDTPFSQTAGSEALRGAVPPTGDPFARLLERLQPGHRARTQGLHGAARGHVLARLSRTLK
APLVCVAVDEEAADALAGDLAFFLGGNGTLLAPRVLRLPADEVLPYDELSPEPHIVSERL
GTLFHLSQGTRFPALVLSLRALLRRVLPVSTMTGLAQLLTTGQDIDRDTLARQLVLMGYQ
SSPLVEDPGTFSVRGGILDVFSPLYERPVRLEFFGDTIESIRLFEPDNQRTVDSLKEVSL
VPARELLLTDQTRAKAEATARAVADHINLPTIKLRERLDALREGLPGFGLEGLLPGFFEG
GLATVFDYLRLWAREPVFYFDDPVGLERAATDLWEELERSHQEADARQDLTLPPSEHFLT
REQADAQLAGWRGVEGGGLALTPGEQPPVLFSFGGTQDLREAILAHHGEEGALTPLVERL
QRWRDMHVACAIACGTLSQADRLKRLLLDRHLMVRIHEEPLTDASKLYEPSVYAHLYTGE
VSHGFVDGTGGLAVLADEEIFGVRARRRVRRSKKSEAFGAGFKDLKEGDLIVHTDFGIGR
YAGLTKMQVNGVPGDFLVLEYAGRDKIYLPVGRMRLIQKFTGGDPSQVQLDKLGTPGWEK
TKRRVKEQLLKMAAELLQLAAARKAHPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDV
LADMQKPTPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKR
FKDYPITVEVISGLKKPPEVRELLKRAKEGRVDILIGTHKLLGGDVAFKDLGLLIVDEEQ
RFGVKQKEQLKRLRTQVDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMK
FDPQVIQEAIQREVARGGQVFFVHNRVQSIASMEKLLRELVPKVSIGVAHGQMGEGQLER
VMLAFTEKQHQVLLCTSIIESGIDISSANTMIINRADAFGLAQLYQLRGRVGRSKERAYA
YLLVPARRAVTRDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLLGDKQSGAIAEIGF
DMYAQLLEEAVAEMQGQPPRMQIEPDITLPMPALIPDDYVPDVHQRLVFYKRFSQASHPD
EVTDLRAELVDRYGEAPDEVDCLSEVTLLKIDMRDLRLRALEGAAGRLVVTLGADALLDG
PKVAALVQRSKGLYRLTPDMKLVTRVPEGVKGLALITEAKKVLRDLSACALPQA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggatacacccttcagccagacagccggttcagaggcgttgcgcggtgccgtccctccc
accggagatccgttcgcccggctgctggagcggcttcagcccggccaccgcgcccggacc
caaggactgcacggcgccgcgcgcggccatgtgctggcccgcctctcgcgcaccctcaag
gcaccgctcgtctgcgtggccgtagacgaggaggcagcggacgccctggccggtgacctg
gccttcttcctgggaggcaatggcacgctgctcgccccccgcgtgctccgcctgcccgcg
gacgaagtgctcccctacgacgagctgtcgccggaaccccacatcgtcagcgaacggctg
ggcaccctcttccacctgagccagggcacgcgctttcccgccctggtgctctcccttcgc
gccctgctccgccgggtgttgcccgtgtccacgatgacggggctggcgcagctcctcacc
accggacaggacatcgaccgggacaccctcgcccggcaactcgtcctcatgggctaccag
tccagcccgctcgtggaggaccccgggaccttctccgtgcgcggcggcatcctggatgtg
ttcagcccgctctacgagcgccccgtgcggctcgagttcttcggggacaccatcgagtcc
atccgcctcttcgagccggacaaccagcgcaccgtggactcgctcaaggaagtctccctg
gtgcccgcgcgcgagctgctcctcaccgaccagacccgcgcgaaggccgaggccaccgcc
cgggccgtggcggaccacatcaacctgcccaccatcaagctgcgcgagcgactggacgcc
ttgcgcgaagggctgccgggctttggcctggaagggctgctccccggcttcttcgagggg
gggctggccaccgtcttcgattacctgcgcctgtgggcccgcgagcccgtcttctatttc
gatgatcccgtggggctggagcgcgccgccacggacctgtgggaggagctggagcgctct
caccaggaagcggatgcgcggcaggacctgacgctccccccgtccgagcacttcctcacc
cgcgagcaggccgatgcgcaactggccggctggcgcggggtggagggcggggggctggcg
ctgacccccggcgagcagccgcccgtcctcttctcctttggaggcacgcaggatctgcgc
gaggccatcctcgcccaccacggcgaggagggcgccctcaccccgctggtggagcgcctc
cagcggtggcgggacatgcacgtggcgtgcgccatcgcctgtggaaccctgagccaggcg
gaccggctcaagcgcctgctgctggaccgccacctcatggtccgcatccatgaggagccc
ctgacggacgcgtccaagctctacgagccctccgtctacgcccacctttatacgggtgag
gtgagccacggcttcgtggatggcaccggggggctcgcggtgctcgccgacgaggagatc
ttcggcgtgcgcgcccggcgccgcgtgcgccgctccaagaagtcggaggcctttggcgcg
ggcttcaaggacctcaaggaaggcgacctcatcgtccacaccgacttcggcattggccgc
tacgcgggcctgacgaagatgcaggtgaacggcgtgcccggcgacttcctcgtgctggag
tacgcggggcgggacaagatctacctgccggtgggccgcatgcggctcatccagaagttc
accggcggagaccccagccaggtccagctcgacaagctgggcacccccgggtgggagaag
accaagaggcgcgtcaaggagcagttgctgaagatggccgcggagctgctccagctcgcc
gccgcccgcaaggcccacccgggccatgccttctccgcgccggaccgctacttcgcccag
ttcgaggcggacttcgagttcgaggagacccccgaccaggccaaggccatcgaggatgtg
ctcgcggacatgcagaagcccacccccatggaccggctggtctgcggagacgtgggctac
ggcaagacggaggtcgccatgcgggcggccttcaaggccgcgctcgaccgcaagcaggtg
gcggtgctggtgcccaccaccgtgctggcccagcagcacttcctgtccttcaagaagcgc
ttcaaggactaccccatcaccgtggaggtcatctccgggctgaagaagccgcccgaggtg
cgggagctgctcaagcgggccaaggaaggccgcgtcgacatcctcatcggcacgcacaag
ctgctcggcggcgacgtggccttcaaggacctgggcttgctcatcgtggacgaggagcag
cgcttcggcgtgaagcagaaggagcagctcaagcggctgcgcacccaggtggacgtgctc
acgctgacggccacccccattccccgcacgctccacatgtccatgtccggcgtgcgcgac
atgagcatcatcgccaccccgccgcaggaccggcgcgccatccgcaccttcgtgatgaag
ttcgatcctcaggtcatccaggaggccatccagcgcgaggtggcccgcgggggccaggtg
ttcttcgtgcacaaccgggtgcagtccatcgcctccatggagaagctcctccgggagctg
gtccccaaggtctccatcggtgtggcccacgggcagatgggcgagggccagctcgagagg
gtcatgctggcgttcaccgagaagcagcatcaggtgctgctgtgcacctccatcatcgag
agcggcatcgacatctccagcgccaacacgatgatcatcaaccgcgcggatgccttcggc
ctggcgcagctctaccagctgcgcgggcgcgtgggccgctccaaggagcgcgcgtacgcg
tacctgctggtgcccgcacggcgcgccgtgacgcgcgacgcgcagcgccgcctggaggtg
ctccagaacttcaccgagctgggcgcgggcttctccatcgccagccatgacctggagatc
cgcggcgcgggcaacctcctgggcgacaagcagtccggtgccatcgcggagattggcttc
gacatgtacgcccagctcctggaggaggccgtggcggagatgcagggccagccgccccgc
atgcagatcgaacccgacatcaccctgcccatgcccgccctcatcccggacgactatgtg
ccggacgtgcaccagcggctcgtcttctacaagcgcttcagccaggccagccacccggat
gaagtcaccgacctgcgggccgagctggtggaccgctacggcgaggcgcccgacgaggtg
gactgcctctcggaggtaacgctgctgaagatcgacatgcgcgacctgcgcctccgggcc
ctggagggggccgcgggcaggctcgtggtgacgctgggggccgatgccctcctggatggc
cccaaggtggcggcgctggtgcagcgctccaagggcctctaccggctcaccccggacatg
aagctcgtcacccgggtgcccgagggcgtgaagggccttgccctcatcaccgaggccaag
aaggtgctcagggacttgagcgcctgcgcgcttccccaggcgtag
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