Stigmatella aurantiaca: STAUR_7125
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Entry
STAUR_7125 CDS
T01425
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sur
Stigmatella aurantiaca
Pathway
sur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STAUR_7125 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sur03019
]
STAUR_7125 (rhlE)
Enzymes [BR:
sur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STAUR_7125 (rhlE)
Messenger RNA biogenesis [BR:
sur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STAUR_7125 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_C_2
ResIII
PPS_PS
AAA_22
adh_short
Motif
Other DBs
NCBI-ProteinID:
ADO74881
UniProt:
E3FZ64
LinkDB
All DBs
Position
complement(8719805..8721544)
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AA seq
579 aa
AA seq
DB search
MSTSFKSLGLSSESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLP
LVERLAGERGPVGLVLAPTRELVLQIAQEAAFFGEPRGLTQAVVTGGTDMGAQVEALRQR
PTLVLATPGRLADLLKEGVANLSAVRMLVLDEADRTLEMGFMPELQQILAALPRERQTLL
FSATLGHNVTRFAQEVLRKPVRVEVTPSGTPAARAVQRLYEVEASEKYPLLLSLLAKDQL
SVLVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCLVATDIAS
RGLDVEDIGHVINFDLPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETVRAIERIVRM
SLPRAEVPREDPVFVEELEEFQAGQEDAELTKPRGLPRPTGVSAKGGRRGGGRARAVDAF
PSDEVLPGWEEPGDKGPTRRGNSGREADRTHSRPTSGGRGKARGASHPGEGQERRGKGAR
RKGAPGRGGSSARGTAPRRENEEAPRRERPVSPRRGEGGREREPARGEKRFGGQRTGKGK
GFARGPKRPGGKGAGPRGKPPRGTGRSPRGQGGGGRRGR
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacctccttcaagtccctcggcctctcttctgaatcgctcgatgcggtgcggcgc
gcccgcttcgcctcgcccacccccatccaggcccaggccatcccaccggcgttggccggg
cgggacgtcatcggttgcgcggtcacgggcaccggcaagaccgccgcctatctgctgccg
ctggtcgagcgcctggccggggaacggggccctgtggggctggtgctcgcccccacgcgc
gaactggtgctgcagatcgctcaggaggccgcctttttcggggagcctcgtggcctgacc
caggcggtggtgactggcggcacggacatgggcgcccaggtggaggcgctccgacagcgg
cccacgctggtgctcgccaccccgggccggttggccgacttgctgaaggagggggtggcg
aatctctccgcggtgcgcatgctcgtgctggatgaggcggaccggacgctggagatgggc
ttcatgcccgagcttcagcagatcctcgccgccttgccccgcgagcgtcagacgcttctc
ttctccgccacccttggccacaatgtgacgcgtttcgcccaggaggtgctgcgcaagccc
gtccgggtggaggtcaccccgagcgggacgcccgccgcgcgggccgtgcagcggctgtac
gaggtcgaagcctcggagaagtacccgctgctgctcagcctgctcgccaaggaccagctc
agcgtgctggtcttcacccgcacccgggaacgggccgagaaggtccaggaagtgctcaag
cgagcgggtcacaagaccgcggccattcacgcggaccgcacccaggggcagcgccggcag
gcgctcgaaggattccggcgagggcagtaccgctgcctggtggccaccgacatcgcgtcg
cgcggcctggatgtggaggacatcggccacgtcatcaacttcgacttgccccacgcgccg
gaagattacgtccaccggattggccgcacggcgcgagccggtgcgagtggacgtgcctcg
acgtttgtcacctctcgggacgaggagactgtgcgagccatcgagcgcatcgttcgcatg
agcctgccgcgtgccgaagtgccccgggaggacccggtctttgtcgaggaactggaagag
ttccaggcggggcaggaggacgcggagctgacgaagcccagaggcctcccacgccccacg
ggcgtgagtgcgaagggggggcgacgcggagggggccgtgcacgcgcggtggacgcgttc
cccagcgatgaggtgctgcccggctgggaagagcctggagacaagggccccacccgccgt
gggaactcggggcgtgaggcggaccgcacgcactcccggcccacgagtggtggcaggggc
aaggcccgtggcgcaagccatccgggcgagggtcaggaacgccgcggcaagggggcccgc
cgcaaaggagccccgggccgtggaggaagttctgcccgggggacagcccctcggcgggag
aatgaggaggctcctcgcagggaacgccccgtttccccgcgccgaggggaaggtgggcgt
gagcgggaacccgcccgtggagagaagcgttttggcgggcagaggacaggcaagggaaag
ggctttgcgcgcggcccaaagcggccgggcgggaagggagcagggcccagggggaagcct
cctcgtggaacaggccgctctccgcgaggacaaggaggcgggggacggcgaggccggtag
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