Strix uralensis (Ural owl): 141935496
Help
Entry
141935496 CDS
T11361
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sura Strix uralensis (Ural owl)
Pathway
sura03013
Nucleocytoplasmic transport
sura03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sura00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141935496 (UPF1)
03015 mRNA surveillance pathway
141935496 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sura03019
]
141935496 (UPF1)
Enzymes [BR:
sura01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
141935496 (UPF1)
5.6.2.5 RNA 5'-3' helicase
141935496 (UPF1)
Messenger RNA biogenesis [BR:
sura03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
141935496 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
141935496 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
141935496
NCBI-ProteinID:
XP_074707844
LinkDB
All DBs
Position
27:5440489..5463857
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcactctc
cccagccagacccaaaccccgcccgggcccgggcaggcggggccgggacagggccaaggc
ccccccggagcggggcagggaccgccaggaccgatcgaagcacaggttaatgggcctgat
ggcattctgcagaatggagctgtggatgataacgtggctaaaaccagccagcttctggca
gagttgaattttgaagaagatgaggaagatacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgatcctgcctgtgtggtttactgtaacaccagcaaa
aagtggttctgtaatggacgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcgaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggcagccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagccccttatccaagatcgctgtttcctttcatgg
ctggtaaagattccatctgaacaggaacagctgagagcacgtcagattacagctcaacag
attaacaaactggaagaactttggaaggaaaatccatctgcaacgcttgaggacttagaa
aagcctggtgttgatgaagaaccacagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaagaaactcaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgattcagatatgcgtcttatgcaaggcgatgag
atctgcttgaggtataaaggagacctggcccctttatggaaaggaattggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcacctgtggaagttactcacaacttccaagtggattttgtatggaagtctact
tcgtttgacagaatgcagagtgctttaaaaacgtttgctgtggatgagacttcggtgtca
gggtacatctatcacaaactgttaggtcatgaggtagaagatgtaattattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtaccggaaaa
acagtgacatcagccacaatcgtctatcatctggctagacagggcaacgggcctgtgtta
gtctgtgctccgagtaacatagctgtagatcagttgactgagaagatccatcaaactgga
ctgaaagtggttcgtctgtgtgctaagagtcgtgaggcaattgactctcccgtatccttc
ttggcattgcataaccagatcagaaacatggatagcatgccagagcttcagaaactgcag
cagcttaaagatgagactggagaactgtcatctgctgatgagaaacgttaccgtgcactg
aagcgaacagcagagcgtgaattacttatgaacgcagatgtgatctgttgcacgtgtgtg
ggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgattgatgaaagc
acacaggctactgagccagagtgcatggtgccagttgtcctgggagcaaaacagcttatt
cttgtgggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagctgcaaaggcc
ggcctgtctcagtccctctttgagaggcttgtggtgctggggattcgtcccattcgcctg
caagtgcagtatcgcatgcatcctgcactcagtgcttttccatccaatatcttctatgag
ggttcgctccagaatggtgttactgcagcggaccgtgtgaaaaaaggctttgatttccag
tggccacagccagataagccaatgtttttctatgttacacaaggacaggaagaaattgcc
agctcaggcacctcttacttaaacaggacggaagctgccaatgtggagaagataactaca
aagctattgaaagctggtgccaaaccagatcagattggcattattactccgtatgaaggt
caacgatcctatctggtgcagtacatgcagttcagtggttccttgcatacgaagctctac
caggaagtggaaattgcaagtgtggatgccttccagggacgagagaaggattttattatc
ctttcttgtgtgagggccaatgaacaccaaggaatagggtttctgaatgacccccggcgt
cttaatgtagctcttacgagagcaaggtatggagtaattattgttggcaacccaaaagca
ctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaaggttctg
gtggagggaccactgaataacctccgggaaagcctcatgcagttcagcaagccccggaaa
ctggtcaataccatcaacccaggtgcccgtttcatgactactgccatgtacgatgcccgt
gaggccatcataccgggatctgtctatgaccggagcagccaagggcgcccatccaacatg
tacttccaaacccacgaccagatcgggatgatcagcgctggccccagccacgtcaccgcc
atgaacattcccatccctttcaacctcgtgatgcccccgatgccgccgccgggatacttc
ggccaggccaacggacccgccgcaggacgtggggcgccaaaaggaaagactggtcgtggt
gggcgccagaaaaatcgctttgggattcctggaactagtcagtcaaacctcccaaatagt
caagcgagccaagatgtggtgtcccagcctttctcccagggtccactgactcaggggtat
atctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
