Strix uralensis (Ural owl): 141937443
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Entry
141937443 CDS
T11361
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sura Strix uralensis (Ural owl)
Pathway
sura03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sura00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141937443 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sura03019
]
141937443 (MTREX)
03041 Spliceosome [BR:
sura03041
]
141937443 (MTREX)
03009 Ribosome biogenesis [BR:
sura03009
]
141937443 (MTREX)
03016 Transfer RNA biogenesis [BR:
sura03016
]
141937443 (MTREX)
Enzymes [BR:
sura01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141937443 (MTREX)
Messenger RNA biogenesis [BR:
sura03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
141937443 (MTREX)
Spliceosome [BR:
sura03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141937443 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
141937443 (MTREX)
Ribosome biogenesis [BR:
sura03009
]
Eukaryotic type
Pre-60S particles
Helicases
141937443 (MTREX)
Transfer RNA biogenesis [BR:
sura03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
141937443 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
141937443
NCBI-ProteinID:
XP_074711182
LinkDB
All DBs
Position
Z:complement(82086076..82132559)
Genome browser
AA seq
1030 aa
AA seq
DB search
MADAFGDELFSVFEEDSAASASSTKKSKEDTRRPGKKLEEKSSVVATGKPKREVEVDSTE
DTILGKKPKLEDVVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKPRTGKA
AKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYR
PTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGLKGPS
NVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLS
DEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP
ARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLL
KGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNLEGQY
NKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGDDFGWG
VVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPNEKGEMQVVPVL
VHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKK
VIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKTAKRELKKARTVLQMDELK
CRKRVLRRLGFATSSDVIELKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCF
VFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVVYT
WSNGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKR
DIVFAASLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggggacgagctcttcagcgtgtttgaggaggactcggccgccagc
gcctcctccaccaagaagagcaaagaggacaccaggagaccaggaaaaaaattggaggaa
aaatcttcagtagttgcgacagggaagcccaaaagggaagttgaggttgatagtactgaa
gataccattttgggaaagaagccaaaattagaggatgttgtatcagaagatgctaatctg
gcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgttgaaggttgtacacac
gaggttgcacttccagcagatgaagacttcacaggtctgaagccaagaactggaaaagct
gcgaaagaatatccattcattcttgatgcctttcagagagaagctattctttgtgtagat
aataaccaatctgtgctagtgtcggctcatacatcagctggtaaaactgtttgtgcagaa
tatgcaatagcccttgctttgagggagaaacagcgtgtgatatttacaagtccaattaaa
gctttgagtaatcagaagtaccgtgaaatgtatgaagaatttcaagatgttggtttgatg
actggggatgtcaccattaatcctacagcttcttgtctggtaatgacaactgagattttg
agaagtatgctctacagaggttctgaggttatgcgagaagttgcgtgggttatttttgat
gaaatccactacatgagagattcagaacgtggtgtggtttgggaagagacaattattttg
ctccctgacaatgttcattacgtgttcctttctgcaactattccaaatgcccgtcagttt
gctgaatggatctgccatcttcacaaacagccttgccatgtgatttacactgattatcga
cccactccactgcagcattatatattcccagcaggaggagatggactccatctggttgtt
gatgaaaatggagatttcagagaagataattttaatacagcaatgcaggtgcttagagat
gcaggagacttggcaaaaggggaccagaaaggcaggaaaggaggattgaaaggtccttca
aatgtttttaagattgtgaaaatgatcatggaaaggaatttccaacctgtgattattttc
agcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaagttagatttcaat
acagatgaagaaaaaaagatggttgaagaagtgttcaataatgcaattgattgtctgtca
gatgaagacaaaaagcttcctcaggttgagcatgtacttcctcttttgaagcgaggaatt
ggtatccatcatggtggtctgcttcctatcttaaaagaaaccatagaaattcttttctct
gagggcctaataaaggccttgtttgcaacagagacttttgctatgggaattaatatgcca
gccaggactgtgctatttacaagtgccagcaaatttgatggaaaagatttccgatggata
tcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgtcgaggtatggatgacaga
ggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggcaagcagctcttg
aagggttcagctgatcctttaaacagtgcattccacctgacgtacaacatggtattgaac
ttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaatccttctatcagttc
caacattacagaactattccagaaatagtagaaagagtgaataatttggaagggcagtac
aataaaatagcaattcccaatgaagaaaatgtggtcatatactacaaaatccgacagcag
cttgcaaaactgggtaaagagattgaagaatatgttcacaaaccaaagtattgtttgccc
tttctacagccagggagactcgtaaaggtgaagaacgaaggtgatgactttggatgggga
gtggttgttaatttctccaaaaaatcaaatgttaagccaaattctggtgaattggaccca
ctatacgtagttgaagtgctactgcactgcagcaaagagagtttgaagaattctgctact
gaggctgcaaagccagccagacctaatgagaaaggagagatgcaggttgttcctgttttg
gtacatcttctctcagctatcagcagtgtccgactttacataccgaaagacctgaggcct
gttgacaacaggcaaagtgtgttaaaatctatacaagaagtacagaagcgatttcctgat
ggagtaccattactagaccctattgatgacatgggcatcaaagatcaaggactgaaaaaa
gtaatccaaaaagtagaggcatttgagcataggatgtattcacatcctcttcacaatgat
cccaacttggaaactgtatacaaactttgtgaaaaaaaagcacagattgctatggatatt
aaaacagcaaagcgagaactgaaaaaagccagaactgtcttacaaatggatgaactcaaa
tgccgcaagcgtgttttgagaagactgggatttgccacatcttcagatgttattgagttg
aaaggacgggtggcttgtgaaatcagcagtgctgatgaactactcctgacagaaatgatg
ttcaatggtctcttcaatgacttatctgcagaacaggcaactgcactactaagctgcttt
gtatttcaagagaactccagtgaaatgccaaaattgacagagcagttggcaggaccactt
cggcaaatgcaggagtgtgcaaaaagaattgccaaggtgtcagcagaagcaaaactggaa
attgatgaagaaaattacttaaattcttttagacccaacctaatggatgttgtgtataca
tggtcaaatggagctaacttcgctcacatctgtaagatgactgatgtctttgaaggtagc
ataattcgttgcatgaggaggctagaagaattgcttcggcagatgtgccaggctgcaaaa
gccattggaaacacagagttggaaaataagtttgcagaggggattacaaaaatcaagaga
gatattgtgtttgctgcaagcctttacctgtaa
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