Strix uralensis (Ural owl): 141939822
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Entry
141939822 CDS
T11361
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sura Strix uralensis (Ural owl)
Pathway
sura03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sura00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141939822 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sura03021
]
141939822 (PCF11)
03019 Messenger RNA biogenesis [BR:
sura03019
]
141939822 (PCF11)
Transcription machinery [BR:
sura03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141939822 (PCF11)
Messenger RNA biogenesis [BR:
sura03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
141939822 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
141939822
NCBI-ProteinID:
XP_074716425
LinkDB
All DBs
Position
2:130622372..130643157
Genome browser
AA seq
1742 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKQHVSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNTTSQSDTKANKTTQAEKQNSKQEKLKASEKTQKKELDQSEA
KSKSPSPLKNKLPNTKDTKIQECESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRRNT
EKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTSTEESEKQGGKQGRSSSRKRSRSRSPKA
RSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSNK
RNVKQEVRDPRRVKKAQEDRPQEAASQHSTKASPDPKENAENWQGSKSGKRWKSGWEENK
NSQQNEEHQALGKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRE
LLKKANERLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCSVWDSPTEEKCGLKKKPLLSD
AELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHISDSLLSGIECEQAKAKRGVQFDR
KEPFGERSRRHSPVSGTNRPFADNLSPLENRRRLEEQNATKGARGSKNFDPYDSWGESDE
FRDALRQQGKSTTEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRARYEDP
EKAPFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRQSAARVGVDGQGSPFVDGAAAGS
SSRIDGPPGQAAMRFEGPLVGAGAAQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPPG
QVGGGGPLRFEGPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFEG
PHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEG
PHGQPMGPHGPSGGGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFDG
PLGRAGPRFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQR
FDGPHQPASRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPSHGLQ
FQRPDIFDGSPGPNFNGPAGPGAQNFPLRAAGHYFDEKPLQGPQYGNFNNMPLGSNQRLS
WFEPGRQPNTTQQLAHPPPFWGMGERIRGVKVSLMSAQPGPYGQGQQYLPNPGSFVQNPA
GALPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQVNETSAQPAAEEEDDDQNE
DQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSHFFEKAHEEVVLKTQEAAKEKEFQS
VPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQNTSSFDCT
PSPSKTPVENPLNIMLNIVKQETQESCDSPKVKEEPDDTPTACAEESTPASTDIKTEPDE
SV
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaagacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactgtatgcacttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ttagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcaa
ggatcatctactatagcttcagttccagcaccttccaagcaacacgtgtctcccacacct
catatgacagttaaaccacctcatcagactgctgtgcaatccgaaaaaaataaaccatcc
ccaagtcctccgcttcatgatatcaaaatagtaaatagggatcctcggcttaatcggatg
gctcagcattcttctcatgctaaagatcaatctcatcggaaagaatttccaccgaacacg
accagtcagtctgataccaaggcaaacaaaacaacacaggctgaaaaacaaaactcaaag
caagaaaaattgaaggcaagtgaaaaaacacagaagaaagaacttgaccagtcagaagca
aaatctaaatcaccatctcctttgaaaaataagctacccaatactaaagatactaaaatc
caggaatgtgaaagcacaaaagtatctgaaattagtaagcgggatccaaggctgaaaaga
catcttcaagataagtcagagggcaaagaggaggaggtgaaagaaaagaggagaaataca
gagaaaaaagaaaaagaggaacataagacatgtgaacatagaccagtaggcagcagaaat
aaagtaattaatggtgctgttcagaaacaagacacaagtacagaggagtcagaaaaacag
ggtggaaaacaagggagatcaagtagtagaaaacgatcacgatcacggtctcctaaggca
cggtcaccatctacgcattctccaaaaagacgagagaggagatcacccaaaagaagactt
agaagtttatctcccacttcatcaactcctaaaattggaaagatacgtcagataggccct
aagcagtctcatgttgaagaaggcacacaagcagcaagagatgaaagaaattctaataag
agaaatgttaaacaagaggtgcgagatccgaggagagtgaaaaaagcccaagaagacagg
ccccaagaagcagcaagccagcattctacaaaagcttctcctgatccaaaggagaatgca
gaaaactggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaataaa
aactcccagcagaatgaagaacaccaagcacttggtaaatcccctcaccaaagacaccgg
gaaaactggcctgctggtaaaggaattttatcaccccgagcaccaaagcagcagcaccgg
ttaagtgtggatgccaatttacagattcccaaagaattgacatctgcaagcaagagagaa
ttacttaagaaggccaatgaacgcttaacatctggtgaaataacacaagatgagttcctc
atggtagctcatcagatccgacagctgttccagtatcaggaagggaagcaccgatgtagt
gtctgggatagccctacagaggaaaaatgtggtttgaagaagaaacctcttctatcagat
gcagaattaacgtattatgaacataaggctaaactaaaaagaacacaagtccagcattcg
ttgtcaaggcttgatcttttggatcctgatgatattttggattatcatatatctgattca
ttgctttctggaatagaatgtgagcaagcaaaagccaagcgtggagtacagtttgacagg
aaagaaccatttggagaaagatcaaggagacactctcctgtaagtggcactaacagacct
tttgctgataacctctcaccgcttgagaatcgacgaagacttgaggaacagaatgcaact
aaaggagcaagaggttctaagaactttgatccttacgacagctggggagaatcagatgaa
tttagagatgctctcagacaacaggggaaaagcacaacagagttccagaaaatagatggt
gatgcaatctgcagatttgataatcgtgaagaaagacagctacttgggcaagctggtgtt
cgagaggaaccaagatcaccattcagtgaacgtttcaaaagagctaggtatgaagatcca
gagaaagcaccgtttccagaaagcccaggatcacgatttggaggcattgaagcaaagcag
aggataagtgcactaatggaagacagacctctatttgatggctcacctaggcagtctgct
gcaagggtcggagtagatggacagggaagcccttttgtcgatggtgctgctgctggttca
agttccagaattgatgggccacctggacaggctgctatgagatttgaggggcctttggtg
ggggcaggtgcagctcagtttgatggaccactggcaggagcagggggagctggagctcta
agatttgatgggccaccagggcagctggcaggggccctgaggtttgaaggacccccagga
caggttggtggaggaggtccgttgaggttcgagggacctcttgggcagataggtgggcct
ttgcggtttgaggggcctgcagggcagcctgtaggtggtcctagatttgaaggacctgga
gttggtctcaggtttgagggtccccgtggccagccttcaggtggtctcaggtttgaggga
cctcatggtcaacctatggggcctcgaggtcagccagggggtggtctcaggtttgaggga
ccccatggtcagcccttggggcctcatggtcaaccagggggtggcctcaggtttgagggg
ccacatttacagccattggggccccatggccaacccggaggtggcctcagatttgagggg
ccacatggtcagcctatggggccacatggaccatcaggtggtgggctcagatttgagggg
ccacatggaccatcaggtggtgggctgagattggaaggaccacatggtcagccaggtgta
ggtcctaggttgattgatggaccagtacaccagggagctggtggacttagatttgatggt
cctctgggtcgggctggtccaagattcgatggttgtcatggagctggatttgatggtcag
cctggacagttgtctctcttgcaaagatttgatggaattcatggacagcctggtccaaga
tttgaaagggcgcctggccaacaggcacaaccacgatttgatacagccatacctcaaaga
tttgatggacctcaccagccagcctctagatttgacttgccccttggccttcaaggtgcc
cgttttgaaaatgtagctaaccatcctgcctcaagactagaaatgtcaccatacggacaa
ggtggtccgtttgtcgaacatcccggccagggctacaatggaccatctcatgggttgcag
ttccagagacctgatatatttgatggttcgcctggaccaaatttcaatgggccagctggc
ccaggagcacagaatttcccattgagagcagctggacattactttgatgaaaaacctctt
cagggccctcaatatgggaacttcaataatatgccactgggaagcaatcagaggttgtcg
tggtttgaacctggccggcagccaaacaccacgcagcagcttgctcaccctcccccattc
tggggaatgggggagcgaattagaggggtgaaggtttctctcatgtctgctcaaccaggg
ccttatggccaaggtcaacagtatttgccaaatcctggaagttttgttcagaaccctgca
ggagcccttccacattcatatcctgataaccatcttggacagcttgatgtcaatgaattg
tttgctaaactgctgtcaacagggatcctcaaactgtctaaaactgattccacttcagca
caagtgaatgaaacatcagcccagccagctgctgaagaggaggatgatgaccagaatgaa
gatcaaaatgttccagacctcactaacttcacagttgaagaacttagacagcgttatgat
agtgttataaatcgactgtacactgggattcagtgttattcatgtggaatgagattcact
acttcacagacagatgtttatgcggatcatttagattggcattatcgtcagaaccggaca
gaaaaagatgttagcagaaaaattacacacagaagatggtactacagtttaacagactgg
attgaatttgaagaaatagctgatctagaggagcgtgcaaaaagccatttttttgaaaaa
gctcatgaagaggttgtgttgaagacacaagaagctgcgaaagagaaggagtttcagagt
gtccctgctggaccagctggagcagtcgagagctgtgaaatttgccaagagcaatttgaa
cagtattgggatgaagaagaggaagagtggcacctgaagaatgctatcagagtagatgaa
aagatttaccatccatcttgctacgaagattaccaaaacacatcatcatttgattgcaca
ccatctcccagcaagactcctgtagaaaatccactaaatataatgttgaacattgttaaa
caagagacacaagagtcctgtgactcacctaaagtcaaagaagaacctgatgacacccct
actgcctgtgcagaagagagcacacctgcatctacagatattaaaacagaacctgatgag
tctgtttaa
DBGET
integrated database retrieval system
