Strix uralensis (Ural owl): 141941007
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Entry
141941007 CDS
T11361
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
sura Strix uralensis (Ural owl)
Pathway
sura04120
Ubiquitin mediated proteolysis
sura04137
Mitophagy - animal
sura04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sura00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
141941007 (PRKN)
04120 Ubiquitin mediated proteolysis
141941007 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
141941007 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sura04131
]
141941007 (PRKN)
04121 Ubiquitin system [BR:
sura04121
]
141941007 (PRKN)
03029 Mitochondrial biogenesis [BR:
sura03029
]
141941007 (PRKN)
Enzymes [BR:
sura01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
141941007 (PRKN)
Membrane trafficking [BR:
sura04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
141941007 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
141941007 (PRKN)
Xenophagy
Other xenophagy associated proteins
141941007 (PRKN)
Ubiquitin system [BR:
sura04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
141941007 (PRKN)
Mitochondrial biogenesis [BR:
sura03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
141941007 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_12
zf-RING_14
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Rcat_RNF216
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
141941007
NCBI-ProteinID:
XP_074719088
LinkDB
All DBs
Position
3:complement(76932666..77742360)
Genome browser
AA seq
496 aa
AA seq
DB search
MCLCSDKVMFGVFVRFNSSHGFPVEVGSDASILQLKEVVAQRQGIPADQLRVIFAGRELS
NDLTLQNCDLAQQSIVHIVQSPQKNSQNKDETEDNGAGGILKALEREPESLTRIDLSTSI
LPSLSAGLAVILDTTKNSISLPSEKSGAASYNSFYVFCKNFCQAVKPGKLRVRCSVCKQG
TLTLARGPSCWDDVLIPNRLRGVCQSQSCNGNIAEFYFKCGAHPTTDSETSVALNLITTN
SRCITCITCTDIRSSELQPAHPASYLPRPAFLRRQRSPVLVFQCVHRHVICLDCFHLYCV
TMLNDRQFIHDPQLGYSLPCVAGCPDSLIKELHHFRILGEEQYNRYQRYGAEECVLQMGG
VLCPTPGCGAGLLPEPGVRKIVCEPGNGIGCGFVFCCECKEEYHEGECSSLLSTQGAMAQ
KGYVVDEHAAMQARWEEASRETIKKTTKPCPSCNIPVEKNGGCMHMKCPRPQCRFEWCWN
CGLEWNRTCMGDHWFD
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtgcctgtgctctgataaggtcatgtttggagtgtttgtcaggttcaactccagccat
ggcttcccggtggaggttggttcagatgccagcatcctccagctgaaggaggtggttgcc
cagcgacagggaattccagctgaccagctgcgggtgatttttgcagggagggagctcagc
aatgacttgacactgcagaactgtgacctggcccagcagagtatcgttcatattgttcag
agtccacagaagaacagtcagaacaaggatgagacagaagataacggtgctggaggtatt
ctaaaagccttggaaagagaacctgaaagtctaactcgcatagatctcagtaccagcatc
ctgccatcactctctgcagggttggctgttattctggatactacaaaaaacagcatttct
cttccctctgaaaaatcaggcgcagctagttacaacagtttttatgttttttgcaaaaat
ttctgtcaagctgtgaaacctgggaaactgagggtccgctgcagtgtatgtaaacaagga
acactgacgttggcaaggggaccatcttgctgggatgatgtgctgattcccaacagatta
agaggtgtttgccagtcccaaagttgcaatggaaacatagcggagttttactttaaatgt
ggagcacacccaaccactgacagtgaaacatctgtggctttgaacctcattacaacaaac
agtcgctgtatcacatgtataacatgcacagatattaggtcttctgagctgcagccagcc
cacccagcctcctacctacccagacctgcttttctcagaaggcagaggagtcctgtgctt
gtgttccagtgcgtgcatcgccatgtcatttgcctagactgcttccatttgtactgtgtg
actatgctgaatgaccgtcagttcatccatgacccacagcttggctattccctcccttgc
gtagctggctgtccagactccttgattaaagagcttcatcacttcaggattctgggagaa
gaacagtacaaccgctaccagcgctatggggctgaggagtgcgtgctgcagatgggagga
gtcctgtgtccaactcccggctgtggagcgggtttgcttcctgaaccaggagtgaggaaa
attgtatgtgaaccaggcaacggaataggctgtgggtttgtgttctgctgtgaatgtaaa
gaagaataccatgaaggggaatgcagctctctcctcagcacacagggagccatggcccag
aagggatatgtagttgatgaacatgcagccatgcaagctcgatgggaagaggcatctaga
gaaacaatcaagaagacaaccaagccatgccccagctgcaatattccagtagaaaaaaat
ggtggttgcatgcacatgaaatgtcctcgccctcagtgcagatttgagtggtgctggaac
tgtggcctggagtggaacagaacctgcatgggagatcactggtttgactag
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