Strix uralensis (Ural owl): 141945523
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Entry
141945523 CDS
T11361
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
sura Strix uralensis (Ural owl)
Pathway
sura03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sura00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141945523 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sura03041
]
141945523 (PRPF40A)
Spliceosome [BR:
sura03041
]
Complex A
U1 snRNP components
U1 related factors
141945523 (PRPF40A)
Complex B
141945523 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
141945523
NCBI-ProteinID:
XP_074729975
LinkDB
All DBs
Position
6:complement(44129773..44155672)
Genome browser
AA seq
1059 aa
AA seq
DB search
MSGGDSAAAAATASPQPLPFSLPKPPPLMQLTPGDAVRPVASAADQSPKSTRLAGRPDWP
AGKPVSLLAPLLPPRGEPEPLMPFGPSSRQPLRGRLLGRCSGGSLLSPSMRPGGVDRGSL
MMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMM
MSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQSSVLFRPQTTHPVVCAAQQTATTNSSVN
EEHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGK
PYYYNSQTKESRWAKPKELEDLEAMIKAEENSTKPEESTPTTTAPAAAADATNTTTTATT
AAETAAAVTTTTATSAATAAPEAETAAASSVADSESSGTATAEEQGQATSAPAAQDQSGE
GAANAADDSSKQEASADAASKKEDDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNAS
WEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENH
EKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEAL
KNILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEE
EKQKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPG
STALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDA
GNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRF
VKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSES
EDDDSHSKKKRQRSESRSVSERSSSAESGTRLFWFVFKLLLTGLWLGLYNFINVFFLFLP
VSAERSYKKSKKHKKKSKKRRHKSDSPESDIEREKDKKERERESEKDRARQRSESKHKSP
TKKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggggactcggcggcggcggcggcgaccgcctccccgcagccgctcccgttc
tccttgccgaagccccctcccctcatgcagctgacgccgggggacgccgtccgccccgtc
gcttccgccgcggaccaatcgccgaagagcaccaggctggcgggccgcccggattggccg
gccgggaagccagtcagcctgctggccccgctgctcccgccccgtggggagcccgagccg
ctcatgccctttggcccctcgtcgcggcagccactcagagggcggcttcttggcaggtgc
agcgggggcagcctgctgagcccctcgatgcggcccggtggtgtcgaccgtggctccctc
atgatgggacacccaggcatgccacattatcctcccatgggaatgcacccaatgggtcag
agaccaccgaatatgccgccagttccacatggtatgatgcctcagatgatgccccccatg
ggaggaccaccaatggggcagatgcctggaatgatgcagtcagtaatgcctggaatgatg
atgtctcacatgtctcaagctgctatgcagcctacagttccgccaggggtgaacagtatg
gatgcgcaagtaggcgtaacacctcctggaactcagagctctgttttatttcgccctcag
acaacgcatcccgtagtttgcgcagcccagcaaacagccacaaccaacagctctgttaat
gaagagcactctaaacagaaatctacgtggacagaacacaaatcacctgatggaagaaca
tattattataatactgaaacaaagcagtctacatgggagaagccagatgatctcaaaacg
cctgctgagcaattgttgtctaaatgtccctggaaagagtataaatctgattctggaaag
ccctactattataattcccaaacaaaggaatcacgctgggcaaagcccaaagagcttgag
gatcttgaagcaatgattaaagctgaagaaaacagcacaaagcccgaagaatcaaccccg
acgacgaccgctccagccgctgcagcggacgcaacaaacacaaccaccacagccacaacc
gccgctgaaaccgccgcggctgttaccaccaccactgctacttctgcagcaacggcagcc
cctgaagcagaaactgcggcggcttcttccgtggcagacagtgagagttctggcacggcc
acggccgaggagcagggacaggcaacttctgcacctgctgcgcaggaccagagcggcgaa
ggtgcagccaacgcagcagacgactcttccaagcaggaggcctcagcagatgctgcttct
aagaaggaggacgacgatgcccaaccagttaaaaaaacctatacatggaatacaaaggaa
gaagcaaagcaagcatttaaagaactgttaaaagaaaagcgagtaccatccaatgcttct
tgggagcaagctatgaagatgatcattaatgatcccagatacagtgctttggcaaaatta
agtgaaaaaaagcaagcctttaatgcttacaaagttcaaacagaaaaagaagagaaagaa
gaagcaagatcaaaatacaaagaagctaaagaatccttccagcgttttcttgaaaaccat
gaaaagatgacatccaccacaagatacaaaaaagctgaacagatgtttggggagatggaa
gtttggaatgcaatatctgagcgtgatcgtcttgaaatttatgaagatgtcttgtttttt
ctgtctaagaaagagaaggaacaagccaaacagttacgaaagaggaattgggaggctttg
aagaacatactagataacatggctaatgtcacttactgcactacttggtcggaggctcag
cagtatctgatggacaatcccacgtttgcagaagatgaggagcttcagaacatggataag
gaggatgcgctgatctgtttcgaggaacatatcagggcattggaaaaagaggaggaagaa
gaaaaacagaaaagcttacttagagaaagaaggcggcagcgtaaaaacagagaatctttt
cagctctttttagacgaactgcacgagcatggacaattacactcaatgtcctcttggatg
gagttgtacccaaccataagctctgacatcaggttcactaatatgcttggtcagcctgga
tcaacagcacttgatcttttcaagttttatgttgaagacttgaaagcacgttaccatgac
gaaaagaagataataaaagatatcttaaaggataaaggatttgtggttgaagtgaatact
tcttttgaagactttgttacggtcatcagctcaactaaaagagctactactttagatgca
ggaaatatcaagctggctttcaacagtctgctggaaaaggcagaagcccgtgaaagagag
agggaaaaagaagaagctcgtaaaatgaagcggaaagagtctgccttcaagagtatgttg
aagcaagctactcctccaattgagttggacgctgtctgggaagatatcagagataggttt
gtgaaggaaccagcctttgaagacatcactctggagtctgaaagaaaaagaatatttaaa
gatttcatgcacgtactagagcacgagtgtcagcatcatcattcaaagaacaagaaacat
tctaaaaagtctaaaaaacaccacaggaagcggtctcggtctcgttcgggctcggagtct
gaggatgacgacagccactccaagaagaaaaggcagcgttcggaatctcgatccgtgtct
gagcgctcctccagtgcggaatctggtacgagattattctggtttgtttttaaattactg
ttaactggtttatggctgggtctttacaattttatcaatgtattttttttgtttcttcct
gtgtctgcagagagaagttacaagaaatcaaaaaaacacaagaaaaagagcaagaagagg
agacataagtctgattcaccagaatcggatattgaacgagaaaaagacaaaaaagaaaga
gagagagagagcgaaaaggatagagctagacaaagatccgaatcaaaacataaatctcct
actaaaaaacggcctggaaaagattctgggaactgggacacttcgggcagcgagctgagc
gaaggggagttggaaaaacagaggaggactcttttggaacaactggatgaagatcaatga
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