Strix uralensis (Ural owl): 141951737
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Entry
141951737 CDS
T11361
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
sura Strix uralensis (Ural owl)
Pathway
sura03015
mRNA surveillance pathway
sura03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sura00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141951737 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
141951737 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sura03019
]
141951737 (PABPC1L)
03041 Spliceosome [BR:
sura03041
]
141951737 (PABPC1L)
Messenger RNA biogenesis [BR:
sura03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141951737 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
141951737 (PABPC1L)
Spliceosome [BR:
sura03041
]
Complex C
Other components
Complex C specific factors
141951737 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_RdRP1_2
RRM_3
DUF6262
ATP-grasp_2
Motif
Other DBs
NCBI-GeneID:
141951737
NCBI-ProteinID:
XP_074744444
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All DBs
Position
18:11368840..11379643
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AA seq
634 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGARALEFTNVYIKNFGDDMDDDRLREIFSQFGKTLSVKVMMDNTGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRLVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQPAPGYFLPPIPQPQTRATF
YSPSPVVPVRPATRWSAQPSRPPSYPAATPILRAAAPPRRLLSNISTMRQASTQVPRVPP
QAQRVANIGTQTVSARVPSSPTPPRSSPQYKYSSAVRNVQPMGHMPPMVAPQVGEPAVHV
QGQEPLTASMLAAAPPQEQKQMIGERLYPLIHAMHPSLAGKITGMLLEIDNSELLLLLES
PDSLRSKIEEAVAVLQAHQATETSHKSSAAVFLQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggccctggctatccgttagcctctctctacgtgggagacctccaccct
gatgtgaccgaagccatgctctacgagaagttctcgcctgctgggcccatcatgtccatc
cgagtctgtcgggacgttgccacgcgccggtcgctgggctatgcctacataaacttccag
cagcccgtggatgctgagcgagccctggacaccatgaacttcgaagtgatcaaaggccgt
cccatccgcatcatgtggtcccagcgggaccccgggctcaggaagtcgggggttggaaat
gtcttcatcaagaacctggatgactccattgataacaaagctctgtacgacacgttctct
gcctttggaaacatcctgtcatgcaaggtggtttgtgatgaaaatggatcccgtggctat
ggctttgttcactttgagactcacgaggcagcaactcgggccattgagaccatgaatggg
atgttgctcaacgaccggaaggtgtttgttggccatttcaaatcccgcaaagagcgtgag
gcagagtttggagctcgggcactggagttcaccaacgtctacatcaaaaactttggggat
gacatggatgatgataggctgcgggaaatattctcccagtttggaaagacgctaagtgtc
aaagtcatgatggacaacactggccgctcaaagggctttggatttgtcaactttgagaag
catgaagaagcgcagaaggcggtggccgacatgaatgggaaggagatcaatgggcggctg
gtgtatgtgggccgagcccagaagcggctggagcgccagagcgagctgaagcggaaattt
gagcagatcaagcaggagcgagtgagcaggtaccagggggtcaacctgtatgtgaagaac
ctggatgatggaatagatgatgagaggctgaggaaggagttctctccctatggcaccatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttgggtttgtatgtttt
tcctccccagaagaggctaccaaggccgtgacggaaatgaacgggcggatcgtcagtact
aagcctctctatgttgcacttgctcaaaggaaagaggagcggaaagcaatcctcaccaac
cagtacatgcagagattagccaccatgagggccctgcctggccctctcctgggctccttc
cagcccgccccggggtacttcctaccccccatcccccagccacaaaccagagctaccttc
tacagccccagcccagttgtcccagtccgtcctgccactcgctggagtgcgcagccctcc
cggcctccctcgtatcctgcagctaccccgatcctgagggctgccgcgccgccccggcgc
ctgctgtccaacatcagcaccatgagacaggcctccacccaggtgccccgtgtgcccccc
caggctcagagagtggccaacatcgggacacagacggtcagcgcccgggtgccctcctcg
cccactccgccacggagttccccgcagtacaagtactcctcagctgtcaggaatgtccag
ccaatggggcacatgccacccatggtggccccgcaggtgggagaacctgctgtgcatgtc
caggggcaggagccgctgacggcatccatgcttgcagcagcccctcctcaggagcagaag
caaatgataggtgaacgcctctaccctctgatccatgcgatgcatccctcgctggctggc
aagatcactgggatgctgctggagatagacaactccgagctgctgctgctcctggagtcc
cccgactccctgcgctccaagatcgaggaagcggtcgctgttctccaggcacaccaggct
accgagacctcgcacaagagcagcgctgcggtgttcctgcagtga
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