Sporosarcina ureae: SporoP32a_12090
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Entry
SporoP32a_12090 CDS
T04877
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sure
Sporosarcina ureae
Pathway
sure03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sure00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SporoP32a_12090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sure03021
]
SporoP32a_12090
03019 Messenger RNA biogenesis [BR:
sure03019
]
SporoP32a_12090
Transcription machinery [BR:
sure03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SporoP32a_12090
Messenger RNA biogenesis [BR:
sure03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SporoP32a_12090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
S1CSD-TOTE-2
NACHT
AAA_25
AAA
AAA_22
NB-ARC
Spore_III_AA
AAA_14
AAA_24
Motif
Other DBs
NCBI-ProteinID:
ARK22198
LinkDB
All DBs
Position
2457818..2459098
Genome browser
AA seq
426 aa
AA seq
DB search
MTMITLADLENMTLKELYSLAKQFKITNYSKLTKKELIFAILKSRAEQEGFFFMEGVLEI
IQSEGYGFLRPINYSSSSEDIYISASQIRRFDLRNGDKVTGKVRPPKENERFYGLLQVEA
VNGQNPEVARERVHFPALTPLYPDRQIKLETSRNNVSTRIMDLVSPVGFGQRGLIVAPPK
AGKTTLLKEIANSITTNHPEAELIVLLIDERPEEVTDIERSVKADVVSSTFDEVPQNHVK
VAELVLERAMRLVESKRDVIILMDSITRLARAFNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALIETGSRMDEVIYEEFKGTGNMELHLDRNLAERRIFPALDIR
RSGTRKEELLIPKENLEKLWAIRKTFSDSHDFTERFMKKLSQSDNNEEFFDKLNEEMKAK
KGKGLI
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgattacgcttgcggacctcgagaatatgacgctcaaagagctttactctcta
gctaagcaatttaaaattactaactatagcaaactgacaaagaaagaattaatttttgct
attttgaaatcacgcgccgaacaagaaggcttctttttcatggaaggcgttctcgaaatt
atacaatctgaaggatatggcttcttacgtcctatcaattactcatccagttcagaagat
atttacatttctgcatcccaaatccgtcgctttgatctacgtaacggagacaaggtaaca
ggtaaagttcgtccaccaaaggaaaatgaacgcttctatggattattgcaagtcgaagca
gtcaatggacaaaatccggaagtcgcacgcgaacgtgttcatttcccggcattgacacct
ttatatcctgatcgtcaaattaaattagaaacatcgagaaataacgtgtctacacgcatc
atggatctcgtctcgcctgttggatttggtcaacgtggattaatcgtcgctcctcctaaa
gcgggaaaaacgacgttgttaaaagaaattgctaactccatcactacaaaccatcctgaa
gctgaactaatcgttctattgatcgacgaacgtccagaagaagtaacggatatcgaacgt
tctgttaaagcagatgttgtcagttcgacatttgatgaagtaccacaaaaccatgtgaaa
gtagcggaactagtactcgaacgcgcaatgcgtctagtagaaagtaaacgcgacgtcatc
atcttgatggactccatcacacgactagcacgtgcattcaacctagtgattccaccaagc
ggacgcacattatccggaggaatcgacccagcagctttccaccgaccaaaaagattcttc
ggtgcagcacgtaacatagaagaaggcggaagcctaacaatccttgccacagctctaatc
gaaaccggctcacgcatggacgaagtcatctacgaagaattcaaaggaaccggcaacatg
gaactgcacctagaccgcaacctagccgaacgcagaatcttcccagcactcgacatccgt
cgctccggcacacgaaaagaagaactgctcatccctaaagaaaacctagaaaaactgtgg
gctatcagaaaaaccttctcagactcccacgacttcaccgaacgcttcatgaaaaaacta
agccaatccgataacaacgaagaattcttcgacaagctaaacgaagaaatgaaggcgaaa
aaaggtaagggccttatctga
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