Serratia ureilytica: J0X03_02230
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Entry
J0X03_02230 CDS
T07185
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
suri
Serratia ureilytica
Brite
KEGG Orthology (KO) [BR:
suri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suri03019
]
J0X03_02230 (csrD)
Messenger RNA biogenesis [BR:
suri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J0X03_02230 (csrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Hrs_helical
RH1
Motif
Other DBs
NCBI-ProteinID:
QSR07831
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All DBs
Position
484766..486700
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AA seq
644 aa
AA seq
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MRFTTKLSALITLLVALAMFLMLMGCSYSFFYVTQDRQERRFDSLVTSLDQAMLRESPRD
QEKWLPIVMRPLGIVSIRVEAGASKLLDYKLPTAKKEPWDALNGYRQVSRPLLQHPGSTL
QITYLDPFASDVRTLQSTAAVTLSIVVMVVILLFSLRWLREQADGEDRLERRARRILNGE
RENVMQGDVREWPANVSGALDRLLADLAEAREERSRVDTLIRAFAAQDAKTGLNNRLFFD
NQLTTQLEEEGSHGIVMMVRLPDFETLRDTHGSVAVQELMYSLVNLLSTFVMRYPSALLA
RYFHSDFTVLLPHRTLKEADGIASQLVNAIDALPSTAMIDREAFLHIGIVAYRSGQTTEQ
VIDYAEQATRHATLQGENGWYVYDSQVPEKGRGSVKWRTLLEQVLARGGPRLYQKPAVTV
EGEVHHREIMSRIYDGAQELLPAEYMPLVEQLGLAESYDRQQVSRIIPLLAQWPEETLAF
PLCVDSILQRSFQRWLRDTLLQCEKSQRRRILIELAEADVCQHIDRLRPVLRLLSGLGCR
LAVSKAGLTVVSTSYIKSLQVEIVKLHPGLVRSIDKRDENQLFVQSLTGACAGTRAQVFA
ASVRTRNEWQTLKERGIHGGQGDFFASPEPIDMGRKKYSRRYRV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttaccaccaaactctctgcattgatcactctgttggtcgcgctggcgatgttt
ttgatgctgatgggatgctcatacagcttcttttacgttacccaggatcgccaggagcgt
cgctttgattcgctggtcacgtctctcgatcaagccatgttgcgcgagtcgccgcgcgat
caggagaaatggttgccgattgtcatgcgcccgctcggcattgtgtcgatccgcgtagag
gccggcgccagcaagctcctcgactataaattgccgacggcgaaaaaagagccctgggat
gcgctgaacggctatcgtcaggtctcgcgcccgctgttgcagcacccgggcagtacgctg
caaatcacctacctcgatcccttcgccagcgatgtgcgcacgttgcaatccacggccgcc
gtcacgctgtcgatcgtcgttatggtggtgattttgctgttcagcctgcgctggctgcgt
gaacaggccgacggcgaggatcgtctggagcgccgcgcgcggcgcattctgaacggcgag
cgcgaaaacgtcatgcagggcgacgtgcgcgaatggccggccaacgtcagcggggcgctc
gaccgcctgctggccgatctggcggaagcccgggaggagcgcagccgggtcgatacgctg
atccgcgccttcgccgcgcaggacgccaaaaccgggctgaacaatcgcctgttcttcgat
aaccaattgaccactcagctggaagaggaaggctcgcacggcatcgtgatgatggtgcgg
ctgcccgatttcgagaccctgcgcgacacgcacggcagcgtagcggtgcaggagctgatg
tattcgctggtcaatctgctgtctaccttcgtgatgcgctatccgtcggcgctgctggcg
cgctattttcacagcgattttaccgtcttgctgccgcatcgcacgctgaaggaggccgac
ggcatcgcctcacagctggtcaacgccatcgatgccttgccttccacggcgatgatcgac
cgtgaggctttcctgcacatcggcatcgtggcgtaccgcagcggccagaccacggagcag
gtgatcgattacgcggagcaggcgacgcggcacgctacgctgcagggcgaaaacggttgg
tacgtgtacgacagccaggtgccggaaaaggggcgcggcagcgtcaagtggcgcacgctg
ctggaacaggtgctggcgcgcggcggcccgcggctgtatcagaaaccggcggtgaccgtg
gaaggcgaggtgcaccaccgtgagatcatgagccgaatttatgacggcgcccaggaattg
ctgccggcggaatatatgccgctggtggagcaattggggttggcggagagttacgatcgc
caacaggtgagccgcatcatcccgttgctggcgcagtggcctgaagaaacgctggcgttc
ccgctgtgcgtggactcgattttgcagcgctctttccaacgctggctgcgggatacgctg
ttgcagtgcgaaaaaagtcagcgtcgacgaattctgattgaacttgcggaggcagatgtg
tgtcaacatatcgaccgtttgcgtccggtgctgaggttgctgtcagggctgggttgccgc
ctggcggtgtccaaagcggggttaaccgtggtcagcacgtcctatatcaagtcgttgcag
gtggagatcgtcaagctccacccggggttggtgcggagtatcgataagcgggacgaaaac
caactgttcgtgcagagtctgaccggcgcctgcgcgggcacgcgcgctcaggtgttcgct
gccagcgtacgtacgcgcaacgaatggcagacgctgaaagagcgtgggatccatggcggg
cagggcgactttttcgcgtcgccggaaccgatcgacatggggcgtaaaaaatattcacgt
cgttatcgtgtttaa
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