Serratia ureilytica: J0X03_05010
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Entry
J0X03_05010 CDS
T07185
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
suri
Serratia ureilytica
Brite
KEGG Orthology (KO) [BR:
suri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
suri03009
]
J0X03_05010 (srmB)
Enzymes [BR:
suri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J0X03_05010 (srmB)
Ribosome biogenesis [BR:
suri03009
]
Prokaryotic type
rRNA helicases
J0X03_05010 (srmB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QSR08344
LinkDB
All DBs
Position
complement(1081339..1082661)
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AA seq
440 aa
AA seq
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MTATTFSELELDDRLIDALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLL
PVLQHLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW
RNQTLLFSATLEGEAIREFAERILKEPVEVEADPSRRERKKILQWYYRADDVQHKTALLI
HLLKQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVN
VLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLL
GKVGRYLNEPLKARVIDELRPKTKVPNEKSNGKPSKKVLAKRAEDKAKNKEKAKVKVRHR
DAKNVGKRRQAKAKPAGDAE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaaccactttttccgaactcgaactcgatgatcgcctgatcgacgcgctgcgc
gacaaaggctacgatcgccccaccgccattcaggccgctgcgatcccgccggcgatggac
gggcgcgacgtcttaggttcggccccgaccggcaccggcaaaaccgccgccttcctgctg
cccgtgttgcagcacctgctggactttccacgcaagaaatccggcccgccgcgcgtgctg
atcctgacgccaacgcgtgaactggcgatgcaggtcgccgaccaggcgcgtgaattggct
gctcatacctcgctggatatcgccaccatcaccggcggcgtcgcttacatgaaccacgcg
gaagtgttcagcgaaaaccaggacgtggtggtcgccaccaccggccgcttgctgcaatac
attaaagaagagaacttcgactgccgcgcggtggaaaccctgatcctcgacgaagccgac
cgcatgctcgacatgggcttcgcgcaggacatcgaaaccatctccgccgaaacccgctgg
cgcaaccagacgctgctgttctccgccacgctggaaggcgaagcgatccgcgaattcgcc
gagcgcatcctgaaagagccggtggaagtggaagccgatccgtcgcgccgcgaacgcaaa
aagatcctgcagtggtactaccgcgccgatgacgtgcagcacaaaaccgcgctgctgatc
cacctgctgaagcagccggacgtgcagaaatcggtgatcttcgtgcgcaaacgcgagcgc
gtgcacgagctggccacctggctgcgcgaagcgggtatcaacacctgctatctcgaaggc
gaaatggtgcaggccaaacgcaacgaagcggtcaaacgcatgatggatggccgggttaac
gtactggtcgccaccgacgttgccgcacgcggtctggatatcctcgatatcacccacgtg
ttcaacttcgacatgccgcgcacggcggacacctacctgcaccgcatcggccgtaccggc
cgcgccgggcgcaaaggcaccgccatttcgctggtggaagcgcacgaccatctgctgctg
ggcaaagtgggccgttacctgaacgagccgctgaaagcgcgcgtgatcgacgaactgcgg
ccaaaaaccaaggtgccgaacgagaagagcaacggcaagccgtcgaagaaagtactggcc
aaacgcgcggaagataaagcgaagaacaaagaaaaggccaaggtgaaagtgcgccatcgc
gacgccaaaaacgtcggcaaacgccgtcaggcgaaggccaaaccggccggcgacgcggaa
taa
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