Serratia ureilytica: J0X03_05650
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Entry
J0X03_05650 CDS
T07185
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase 2
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
suri
Serratia ureilytica
Pathway
suri03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
suri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
J0X03_05650 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
suri03000
]
J0X03_05650 (alkA)
03400 DNA repair and recombination proteins [BR:
suri03400
]
J0X03_05650 (alkA)
Enzymes [BR:
suri01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
J0X03_05650 (alkA)
Transcription factors [BR:
suri03000
]
Prokaryotic type
Helix-turn-helix
AraC family
J0X03_05650 (alkA)
DNA repair and recombination proteins [BR:
suri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
J0X03_05650 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
DUF1952
HTH_23
HTH_28
Motif
Other DBs
NCBI-ProteinID:
QSR08468
LinkDB
All DBs
Position
1223827..1225317
Genome browser
AA seq
496 aa
AA seq
DB search
MQKKPNPSVAMNTQQQALYDALRARDRKFDGRFFVGVSSTGIYCRPVCSARTPKLENCTF
YPSAAAAELAGFRPCLKCRPELAPGLALIDLGNRYAQVAVQLIEQGYLSEHSCEALAARL
GISDRHLRRIFAEQFGASPIDYAQSHRLLQAKRLLADTDLPLSEVAFAAGFGSLRRFNEL
FKARYRLIPSALRSGGARGERAAASGLVFHLGYRPPYDWARMLNFLQARAVQGVERVEGR
RYLRSIAVSQGGTEHRGWLSVQPEEARNRVRVEIAPTLSLVTTEVLRRVRLLFDLDAAPD
RINEALGSLAADAPGLRLPGCVNSFEQAARAVLGQLVSVKMAATFAGRMAERWGEALATP
HEGITHVFPTAERVAQLQPEELRPLGVQVKRAAALIEIARALGEGRLQLDNVLDIEQGIK
ALTALPGIGNWTASYIAMRAWSWPDVFLAGDYLIKQRFPGMTPRQIERYAERWRPWRSYA
TLHLWHNGGWAPEGES
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaaaaccgaacccgagcgttgccatgaatactcaacagcaagcgttgtacgac
gcgctgcgcgcgcgtgaccgcaaattcgacggccgttttttcgtcggcgtctcttccacc
ggcatctattgtcgcccggtgtgcagcgcccgcacgccgaagctggaaaactgcaccttt
tatccgagcgcggcggcggctgaactggcggggtttcgcccctgcctcaaatgccgaccg
gaactggcgcccggcctggcgctgatcgatctgggcaaccgctatgcccaggtggcggtg
cagctcatcgagcaggggtatctgtccgaacacagctgcgaagcgctggcggcgcggctg
ggcatttccgatcgccatctgcggcgcatcttcgccgaacagtttggcgcctcgccgatc
gattacgcgcagtcgcaccggttgctacaggccaagcgcctgctggcggacaccgatctg
ccgctcagcgaggtggcgttcgccgccggtttcggcagcctgcggcgtttcaacgagctg
ttcaaggcgcgttaccgcctgatcccgtcggcgctgcgcagcggcggcgcgcgcggtgaa
cgggccgccgccagcgggttggtgtttcacctgggctatcggccgccctatgactgggcg
cgcatgctgaatttcttgcaggcgcgcgccgtgcagggcgtggagcgggtcgaggggcgc
cgctacctgcgctcgatcgccgtcagccagggcggcacggaacaccgcggctggctcagc
gtgcagccggaagaggcgcgcaatcgggttcgggtcgagattgcgccgacgctcagtctg
gtgacgacggaggtgttgcgccgggtgcgcctgctgtttgatctggacgccgcgccggat
cgcatcaatgaggcgctgggctcgctggcggccgatgcgccggggctgcgcctgccgggc
tgcgtgaacagtttcgagcaggcggcgcgtgcggtgctggggcagttggtcagcgtgaaa
atggcggcgaccttcgccgggcggatggccgaacgctggggcgaagcgctggcgacgcca
catgagggcatcacccacgttttccccacagcagaacgggtggcgcagctgcagcctgaa
gaactgcgcccgctcggggtgcaagtgaagcgtgcggcggcgctgatcgagatcgcccgc
gcgctgggggaaggacggctgcagctcgacaacgtgctggatatcgaacagggcatcaag
gcgctgaccgcgctgccgggcatcggcaactggaccgccagctatatcgcgatgcgcgcc
tggtcgtggccggacgtgttcctggccggcgactacctgatcaaacagcgtttccccggt
atgacgccgcgccagattgaacgctacgccgaacgttggcgcccgtggcgctcttacgcc
acgctgcacctgtggcacaacggcggctgggcgccggaaggagagagttga
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