Serratia ureilytica: J0X03_10620
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Entry
J0X03_10620 CDS
T07185
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
suri
Serratia ureilytica
Brite
KEGG Orthology (KO) [BR:
suri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
suri03032
]
J0X03_10620 (topA)
03400 DNA repair and recombination proteins [BR:
suri03400
]
J0X03_10620 (topA)
Enzymes [BR:
suri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J0X03_10620 (topA)
DNA replication proteins [BR:
suri03032
]
Prokaryotic type
DNA Topoisomerases
J0X03_10620 (topA)
DNA repair and recombination proteins [BR:
suri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J0X03_10620 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QSR09383
LinkDB
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Position
2274409..2277006
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSASKKSADSTEDKAKKKVK
KDEKAALVNRMGVDPYHGWKAHYEILPGKEKVVAELKSLAENADHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAIQQAFKQPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVERERDIKAFVPEEYWELHADLLAKGETALQMEVTH
AHDKPFKPVNREQTHAAVKLLEKARYTVLDREDKPTSSKPGAPFITSTLQQAASTRLSFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDALNMVRGYIGDNFGDKYLPKAPNQYSSKEN
SQEAHEAIRPSDVNVLAEQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVKAGDY
QLRAKGRTLRFDGWTKVMPALRKGDEDRTLPFVEIGSELDLQKLIPSQHFTKPPARYSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVESRRFYAEKMGEIVTDRLEENFRELMNY
DFTARMEDGLDEVANNQAEWKAVLDEFFVDFSEQLETAEKDPEEGGMRPNQMVMTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPEAEVLNILEGDDAETNALRARR
RCQKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEEGEFRLKGYDGPVVECDKCGSEMHL
KMGRFGKYMGCTNENCKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELARFKDRLPEKLRYLADAPVADAEGNKTLVRFSRKTKQQYV
SSEKDGKATGWSAFYVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataaatat
ttaggaagtgactacgtggtgaagtccagcgtcggtcatatccgtgatttgccgaccagt
ggctcagccagcaaaaagagcgctgactcaaccgaagacaaagccaagaaaaaagttaaa
aaagatgagaaggcggcgctggtaaatcgcatgggcgtcgacccttaccacggctggaaa
gcgcattatgaaatcctgccgggtaaagaaaaagtggtcgccgagttaaaatcgttggcg
gaaaacgccgaccacatttatctcgcaaccgaccttgaccgcgaaggggaagccatcgcc
tggcacctgcgggaagtgatcggtggggatgacaaacgctttagccgcgtggtgtttaac
gaaatcaccaaaaacgcgatccaacaggcgttcaaacagccgggcgagttgaacattgac
cgcgtcaacgcgcagcaggcgcgccggtttatggaccgcgtggtgggctatatggtctcg
ccgctgctgtggaaaaaaattgcccgcggcctgtccgccggccgcgtacagtcggtggcg
gtgcgtctggtggttgagcgcgaacgcgacatcaaggcgttcgtgccggaagagtactgg
gagctgcatgccgatctgctggcgaagggtgaaaccgcgctgcagatggaagtgactcac
gcgcacgacaaaccgttcaagccggtcaaccgcgagcagacgcacgccgcggtcaagttg
ctggaaaaagcccgctacacggtgctggatcgcgaagacaaaccgaccagcagcaagccg
ggcgcgcctttcattacctccacgctgcaacaggccgccagcacccgcctgagcttcggc
gtgaagaaaaccatgatgatggcgcaacggctgtatgaagccggtcacatcacctatatg
cgtaccgactccaccaacctgagccaggatgcgctcaacatggtgcgtggctacatcggc
gacaacttcggcgataaatacctgccgaaggcgccgaatcagtacagcagcaaagagaat
tcgcaggaagcgcacgaagcgatccgtccttcggacgtgaacgtgctcgccgaacagctc
aaagacatggaagcggacgcgcagaagctgtatcagctgatctggcgtcagttcgtcgcc
tgccagatgacgccggcacaatacgattccaccacgctgacggtgaaagccggcgattat
cagctgcgcgctaagggccgtacgctgcgctttgacggctggaccaaggtgatgccggcc
ctgcgcaaaggcgatgaagatcgcacgttgccgttcgtcgaaatcggcagcgagctggat
ctgcagaaactgatcccgagccagcacttcaccaagccgccggcgcgctacagcgaagcc
tcgctggtgaaagagctggaaaaacgcggcatcggccgtccgtccacttacgcctccatc
atctcgaccattcaggatcgcggttatgtgcgggtggaaagccgccgtttctatgccgag
aaaatgggtgagatcgtcaccgaccgtctggaagagaacttccgcgagctgatgaactat
gacttcaccgcccgcatggaagacggcctcgatgaggtcgccaacaaccaggccgagtgg
aaagcggtgctggacgaattcttcgtcgatttcagcgagcagcttgaaacggcggagaag
gatccggaagaaggcggcatgcggcctaaccagatggtgatgaccagcatcgactgcccg
acctgcggccgcaagatgggcatccgtaccgccagcaccggcgtgttcctcggctgttcc
ggctacgcgctgccgccgaaggaacgttgcaaaaccaccatcaacctggtgccggaagcg
gaagtgctcaacatcctcgaaggcgacgacgcggaaaccaacgcgctgcgcgcccgccgc
cgctgccagaaatgcggtacggcgatggacagctatctgatcgacaaccagcgcaagctg
cacgtctgcggtaacaacccggcgtgtgacggctatgagatcgaagagggcgagttccgt
ctgaaaggctatgatggcccggtggtggagtgcgacaagtgcggctcggaaatgcacctg
aaaatggggcgtttcggcaagtacatgggctgcaccaacgagaactgcaaaaacacccgc
aagatcctgcgtaacggcgatgtcgcgccgccgaaggaagatccggtgccgttgccggag
ctgccgtgcgagaagtccgacgcctatttcgtgctgcgtgacggcgctgccggcgtgttc
ctggcggccaacaccttccctaaatcgcgcgagacccgcgcgccgctggtggaagaactg
gctcgcttcaaggatcgtctgccggagaaactgcgctacctggccgatgcgccggtggcg
gatgccgaaggcaacaaaacgctggtgcgtttcagccgtaaaaccaagcagcagtacgtc
tcctctgaaaaagacggcaaggcgaccggttggtccgcgttctacgtggacggcaagtgg
gtcgaaggcaagaagtaa
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