Serratia ureilytica: J0X03_11025
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Entry
J0X03_11025 CDS
T07185
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
suri
Serratia ureilytica
Brite
KEGG Orthology (KO) [BR:
suri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suri03019
]
J0X03_11025 (hrpA)
Enzymes [BR:
suri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J0X03_11025 (hrpA)
Messenger RNA biogenesis [BR:
suri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J0X03_11025 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
NACHT
nSTAND3
T2SSE
PhoH
AAA_16
SLFN-g3_helicase
AAA_23
HALZ
Motif
Other DBs
NCBI-ProteinID:
QSR09451
LinkDB
All DBs
Position
2368739..2372626
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLEALPAQLGELMLRDQQRLRRRLQGARKIKNPDAQLAVAAEVESDIATARQKVQAR
AASCPRITYPESLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGL
IGHTQPRRLAARTVANRIADELETPLGGSVGYKVRFNDQVGENTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVEVRYRPVVDDGDDTDRDQLQAIFDAVDELGREGPGDILIFMSGEREIR
DTADALNRLNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGVCIRLYSEQDFLSRPAFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTADNGHYQ
LTPQGRQLAQLPIDPRLARMVLEAQKSGSVREVMIITAALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAFVNLWDYLQEQQKANSSSQFRRLCRNDFLNYLRVREWQDIYTQLRQVV
KELGLPINSTPSDYRSVHTALLTGLLSHIGQKDADKQEYTGARNARFSIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKHSYSEPHWSKSQGAVMASEKVTLF
GLPIVAARQVNYGAIDPLLCRELFIRHALVEGDWQTRHAFFRENQKLRAEVEELEHKSRR
RDILVDDETLFGFYDRRLPNDVVSGRHFDSWWKTAAKQQPDLLNFEKEMLIKDGANKISA
LDYPNFWYQGNLKLRLSYQFEPGTDADGVTVHIPLPILNQVEEQGFEWQIPGIRRELVIA
LIKSLPKPVRRNFVPAPNYAEAFLGRVTALELPLLDALERELRRMTGVTVSRDDWQWDQV
PDHLKMTFRVVGEKNQTLREGKDLAALRLQLKEKVQETLSAVADDGLEQSNLHVWSFGQL
PAFYEQKRGGYSMKAYPALVDEKDSVAIRLFDSESEQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLELIDDCISCGIDKLIAEHGGLVWQEEDFARLQEQIRAEL
NDTVVEVAKQVEQILTAVFNINKRLKGRVDMSLALALSDIKTQLGGLVYRGFVTGNGWKR
LPDTLRYLQAIERRLEKLAIDPHRDRAQMLRVEQVQQAWQQWLNKLPPKRQQEEEVKAVR
WMIEELRVSLFAQQLGTPYPISDKRILQTIEQLSG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatctccgctcgaggcactgccggcccaactgggcgagctgatgctccgcgatcaa
caacgcctgcgtcgtcgcctgcagggcgcacgaaaaatcaaaaatcccgatgcccagctg
gcggtcgccgccgaagtggaaagcgacatcgcgacggcgcggcaaaaagtgcaggcgcgc
gccgcgtcttgcccgcgcattacctatccggaaagcctgccggtcagccagaaaaagcag
gacatcttaaacgctgtccgcgaccaccaggtggtgatcgtcgccggggagaccggctcg
gggaaaaccacccagttgccgaagatctgtctggagctggggcgtggggtgaaagggctg
atcggccatacccagccgcgccgcctggcggcgcgcaccgtcgccaaccgcatcgccgac
gagctggaaaccccgctcggcggcagcgtgggctacaaggtgcgcttcaacgatcaggta
ggggaaaacaccctggtcaagctgatgaccgacggcattttgctggcggagattcagcag
gatcgcctgctgatgcagtacgacacgctgatcatcgatgaagcgcacgagcgcagcctg
aatatcgactttattctcggttacctgcgcgaactgctgccgaagcgcccggatctcaag
gtgatcatcacctcggcgaccatcgatccgcagcgtttctcgcgccacttcaacaatgcg
ccgatcatcgaggtttccggccgcacctacccggtggaggtgcgctaccgcccggtggtc
gacgacggcgacgataccgatcgcgaccagctgcaggcgattttcgatgcggtagatgag
cttgggcgcgaagggccgggcgacattctgatcttcatgagcggcgagcgtgagatccgc
gataccgccgacgctttgaaccgcctcaatttgccgcacaccgaggtgctgccgctgtat
gcgcgcctgtcgaacagcgagcagaatcgggtgttccagtcgcaccacggccgccgcatc
gtgctggccaccaacgtggcggaaacctcgctgacggtgccgggcatcaaatacgtcatc
gatccgggcaccgcgcgcatcagccgctacagcttccgcaccaaggtgcagcgcctgccg
atcgagccggtgtcacaggcctccgccaatcagcgtaaagggcgctgcggccgcgtgtcg
gagggggtgtgcatccgtctgtactccgaacaggatttcctctcgcggccggcgtttacc
gatccggaaattctgcgcaccaacctggcgtcggtcattctgcagatgacctcgctgggg
ctgggcgacatcgccgcgtttccgttcgtcgaggcgccggacaaacgcaacattcaagat
ggcgtgcgcctgctggaagagctgggggcgatcaccaccgccgataacggccactatcag
ctgacgccgcagggccggcagctggcgcagttgccgatcgacccgcgtctggcgcgcatg
gtgctggaagcgcagaagagcggcagcgtgcgtgaggtgatgatcatcaccgccgcgctg
tcgattcaggatccgcgtgagcgcccgatggacaagcagcaggcctcggatgaaaaacac
cgccgcttcgccgacaaagactcggacttcctggcgttcgtcaacctgtgggattatctg
caggagcagcaaaaggcgaactcctccagccagttccgccggctgtgccgcaacgatttt
ctcaactacctgcgggtgcgcgagtggcaggatatctatacccagctgcgccaggtggtg
aaagagctggggctgccgatcaacagcacgccttccgactaccgcagcgtccacaccgcg
ctgctgaccggcctgttgtcgcacatcggccagaaggatgcggacaagcaggaatacacc
ggcgcgcgcaacgcccgcttctcgatcttccccggctccggcctgttcaagaagccgccg
aagtggaccatggtggccgaactggtggaaaccagccgcctgtgggggcgcatcgccgcg
cgcatcgaaccggaatggatcgagccgctggctcagcacctggtgaaacacagctacagc
gaaccgcactggtcgaagtcgcagggggcggtgatggccagcgaaaaggtcacgttgttc
ggtctgccgatcgtcgcggcgcgccaggtcaattacggcgccatcgatccgctgctgtgc
cgcgagctgtttatccgccatgcgctggtggagggcgactggcagacgcgccatgctttc
ttccgcgaaaaccaaaagctgcgcgccgaagtggaagagctggagcataaatcgcgtcgc
cgcgacattctggtggacgacgaaacgctgttcggcttctacgatcgccgtctccccaac
gacgtggtgtccggccgtcatttcgacagctggtggaagaccgccgccaaacagcagccc
gacctgctgaacttcgaaaaagagatgctgatcaaggatggcgccaacaagatcagcgcg
ctggattacccgaacttctggtatcagggcaacctcaaactgcggctgagctatcagttc
gaaccagggaccgacgccgacggcgtgacggtgcacatcccgctgccgatcctcaaccag
gtggaggagcagggcttcgaatggcagatccccggcatccgccgtgagctggtgatcgcg
ctgatcaaatcgttgccgaaaccggtgcgtcgcaacttcgtgccggcgccgaactacgcc
gaagcgttccttggccgcgtaacggcgctggaattgccgctgctggacgcgctggagcgc
gagctgcggcgcatgactggcgtgaccgtgtcacgtgatgactggcagtgggatcaggtg
cccgatcacctgaaaatgactttccgcgtggtgggcgagaaaaatcagacgctgcgcgaa
ggcaaagatctggccgccctgcgcctgcagttgaaagagaaggtgcaggagacgctgtcg
gcggtggccgatgacggactggagcagagcaacctgcatgtctggagctttggccaattg
ccggcgttctacgagcagaagcgcggcggctattcgatgaaagcctatccggcgctggtg
gatgaaaaggacagcgtggcgatccgcctgttcgacagcgaaagcgaacagcaacaggcg
atgtggcagggcacgcgccgcctgctgttgttgaatattccttcgccgatcaaatatctg
catgaaaagctgccgaacaaggccaagctggggctttatttcaacccgtacggcaaggtg
ctggagctgatcgacgactgcatttcgtgcggcattgacaaactgatcgccgaacacggc
ggcctggtttggcaggaggaagattttgcacggttgcaggagcagatccgcgccgagctg
aacgacacggtcgttgaggtggccaagcaggttgaacagatcctgacggcggtcttcaac
atcaacaaacggctgaaaggccgggtggacatgtcgttggcgctggcgctgtcggacatc
aagacccagctcggcgggctggtctaccgcggcttcgtcaccggcaacggatggaaacgg
ctgccggacacgctgcgctacctgcaggcgatcgaacgccgattggagaaactggctatc
gatccgcaccgcgatcgcgcgcagatgctgcgggtggagcaggtgcagcaggcgtggcag
cagtggctgaacaagctgccgccgaagcgacagcaggaggaagaggtgaaagcggtgcgc
tggatgattgaagaactgcgcgtcagcctgttcgcgcagcaattgggcacaccttacccg
atctccgacaagcgcattctgcaaaccatcgaacagctttcgggctaa
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