Serratia ureilytica: J0X03_14450
Help
Entry
J0X03_14450 CDS
T07185
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
suri
Serratia ureilytica
Pathway
suri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
suri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0X03_14450 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suri03019
]
J0X03_14450 (rne)
03009 Ribosome biogenesis [BR:
suri03009
]
J0X03_14450 (rne)
Enzymes [BR:
suri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
J0X03_14450 (rne)
Messenger RNA biogenesis [BR:
suri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J0X03_14450 (rne)
Ribosome biogenesis [BR:
suri03009
]
Prokaryotic type
rRNA processing factors
J0X03_14450 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QSR05654
LinkDB
All DBs
Position
3079386..3082754
Genome browser
AA seq
1122 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAVIVPNDEMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEDMERPLEDAPMERKRPEQPALASFSLSADVPP
PAEEPVAVAKPVAAAAKAKAAAPAAAKPGFLGRLFGGLKSLFAGEEQPAVEEAKPAETPK
AEGNGENRRQDRRGQRRQGTGRKERGERSDRGDRPERGERKERGEGRDNRERDNREPREN
REGRESRESRDEQRRNRRNQQQNAPVAEETASEESAKAPREDQQQRREQRAERQRRRQEE
KRQAQQEVKALESVDAVESTDEEQEERQQQNMQRRQRRPLTQKVRILSAEEELQRAAEEL
LAPKAPVAKAEDAQPTADDSVKLLPETVAAQAEDDAQGENRGNGEGMPRRSRRSPRHLRV
SGQRRRRYRDERYPLQSPMPLVGAFASPEMASGKVWVSYPVAQVEEAEVQTEAVEQTPVV
AAAVEQHSVAVEETQAAASVNEPAPEAAVETAAVTVTEEAAVVAPVVATPAEETPAPVET
APATVAVEEPKAEETAPAVEVEPVAETVAAEPVVEAKPAEDEPVVETAPVEAAPTEETPV
VEAAPAAAAAPVEKAPEPTAAEPAPAVAQQPAPVKAVQDALYKHIATAPMTKAPAPAYVP
EERKHSDWQRPSFNFEGKGSAGGHSAVSQATAPATKPQPVNE
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgccctcgtagat
ggacagcggctgtatgatttggatatcgaaagtccgggtcatgagcagaaaaaagcgaat
atttacaaaggcaaaatcacccgcattgaaccaagtcttgaagcagcgttcgtggactac
ggcgcagaacgacatggtttcctccctcttaaagaaatcgcccgcgaatactttcctagc
aattactcttcccatggccgcccgaacatcaaagatgtcctgcgcgaaggccaggaagtc
atcgttcaggtagacaaagaagaacgtggcaacaaaggcgccgccttgaccaccttcatc
agcctggcgggcagctatctggtgctgatgccgaacaacccgcgcgccggcggtatttct
cgccgcatcgagggtgacgatcgcaccgagctgaaagaagcgctctcttcgctgcaactg
ccggacggcatgggcctgatcgttcgcaccgcgggcgtaggcaaatccgccgacgcgctg
cagtgggatctctccttccgcctgaagcactgggaagcgattaaaaaagccgccgaaggc
cgccctgcgccgttcctgatccaccaggaaagcaacgttatcgtgcgcgccttccgcgat
tacctgcgcccggacatcggcgaaatcctgatcgacaacccgaaaattctcgatctggcc
aaagagcatatcgccgcgctgggccgcccggatttcagcagcaaaatcaaactgtacagc
ggtgaaattcctctgttcagccactatcagatcgaatcgcagatcgaatccgccttccag
cgcgaagtgcgcctgccgtccggcggctcgatcgtcatcgacagcaccgaagcgctgacc
gccatcgacatcaactccgcacgcgcaacccgcggcggcgatatcgaagagacggcgttc
aacaccaacctggaagcggcggacgaaatcgctcgccagctgcgcctgcgcgatctcggc
ggcctgatcgtcatcgacttcatcgacatgacgccggtgcgccaccagcgcgaagtggaa
aaccgcttgcgcgacgccgtgcgtcaagaccgcgcgcgcatccaaatcggccgcatctcc
cgtttcggcctgctggaaatgtcgcgtcagcgcctcagcccgtcgctgggtgaatccagc
caccacgtgtgcccacgctgtaacggcaccggcaccatccgcgacaacgaatcgctggcg
ctgtccatcctgcgcctgatcgaagaagaagcgctgaaggaaaacaccaaagaagttcac
gctatcgtaccggttcaggtcgcttcgtacctgctgaacgaaaagcgtgaatccgtcagc
gcgatcgaaaaacgtcagggtggcgtgaaagccgtcatcgtgccgaacgatgaaatgcaa
accccgcactactcggtgctgcgcgtacgcaagggcgaggaaacatctaccctcagctac
ctgctgccgaaactgcacgaagaagacatggagcgtccgctggaagatgcgccgatggaa
cgcaagcgtccggagcaaccggccctggcttccttctccctgtccgccgatgtgccgccg
ccggctgaagaacccgtcgccgttgccaaacctgtcgctgcagccgccaaggctaaagcc
gcagcgccggccgccgccaagccgggcttcctgggccgcctgttcggtggtttgaagagc
ctgttcgccggtgaagagcaacctgccgtcgaagaagccaaaccggccgaaacgccgaag
gcggaaggcaacggtgaaaaccgtcgtcaggatcgtcgcggtcagcgccgtcaaggcacc
ggccgtaaagagcgcggtgagcgtagcgaccgtggcgatcgtccggaacgcggcgaacgt
aaagagcgcggtgaaggccgtgacaatcgcgaacgcgacaaccgtgaaccgcgtgagaac
cgtgaaggccgtgaatcgcgtgaatcccgcgatgaacagcgccgtaaccgccgcaaccag
cagcagaacgcgccggtagcggaggaaactgcctcggaagaaagcgctaaagcgccgcgc
gaagatcagcagcagcgccgtgaacagcgtgctgaacgccagcgtcgtcgtcaggaagag
aaacgccaggctcagcaggaagtgaaagcgctggaaagcgttgacgcggtcgagagcacc
gacgaagagcaggaagaacgccagcagcagaacatgcagcgccgtcagcgccgccctctg
acgcagaaagtgcgcatcctgtccgcggaagaagagctgcagcgcgcagcggaagagctg
ttggcgccgaaagcgccggtagcgaaagccgaagatgcgcagccaaccgccgacgacagc
gtgaagctgctgccggaaaccgttgccgctcaggcggaagacgatgcccagggcgaaaac
cgcggcaacggcgaaggcatgccgcgtcgttcccgtcgttcaccgcgtcacctgcgcgtc
agcggccagcgtcgccgtcgttaccgcgacgagcgttaccctctgcaatccccaatgccg
ttggtgggcgcgttcgcttctccggaaatggcatcaggcaaagtctgggtaagctacccg
gtcgctcaggttgaagaagccgaagtgcaaaccgaagccgtagagcagacgccggttgtc
gccgcagcggttgaacagcacagcgttgccgtggaagaaactcaggccgcggccagcgtc
aacgaaccggcaccagaagccgccgttgaaactgccgccgtcaccgtaacggaagaagcg
gcagtcgtagcgccggttgttgccaccccggccgaggaaactccggcgccggtggaaacc
gccccggcaacggttgcggttgaagaaccgaaagcggaagagactgcccctgcagtggaa
gttgagccggtagctgaaaccgttgcggcagagccagtggttgaagctaagccagcggaa
gacgagcctgtggtcgaaactgcaccggtagaagccgcacctacggaagaaacgccagtg
gtagaagccgcacctgcagcggcagccgctccggtagaaaaagcgccggaaccaacggcc
gccgaacctgcgcctgcggttgctcagcagccggcaccggtgaaagccgtgcaggacgcg
ctgtacaaacacatcgccactgcaccgatgaccaaagcgcctgcgccggcctatgtgccg
gaagaacgcaagcacagcgactggcagcgcccttccttcaactttgaaggcaaaggttca
gccggtggtcactcggcagtgagccaggccaccgcgccggccaccaagccgcagccggtt
aacgaataa
DBGET
integrated database retrieval system
