Sporosarcina ureilytica: BI350_00840
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Entry
BI350_00840 CDS
T08603
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
surl
Sporosarcina ureilytica
Pathway
surl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
surl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BI350_00840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
surl03400
]
BI350_00840
Enzymes [BR:
surl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BI350_00840
DNA repair and recombination proteins [BR:
surl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BI350_00840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AOV06306
UniProt:
A0A1D8JC70
LinkDB
All DBs
Position
complement(166354..169908)
Genome browser
AA seq
1184 aa
AA seq
DB search
MKDRCEILEALINYYEQKNDIHRLVEELKSGNDSQLIAGLSGGAKPVFFQSIQQSIEKPI
LIVSPNLLQAQRTYENLVKMLGDSYVHLYPAEELVAAEFSVSSYELRAQRIETIDHMVRV
GKGVYITPIAGMRRLLPHKKRWLENSLSTKIDDTIDVDLWIEKLTAMNYTRQDMVTAPGE
FALRGGILDLYPLHLENPVRIELFDTDVDSIRIFSAEDQRSIGKLESVSILPATEYVWTE
EDLQTISEKLEYELSVSLKKVKNEESKELLTMHISHDIALMKEGNVPEGILKYASFANEQ
PTSLGTYFSTDGIVVFDEIGRITEVLESLEAEEEEWSISLVEEGKIVHSAKLSFTFDEIN
KMLTQHKLYLSLFIRTIPGITVSKTMTISCKPMQEFHGQMQMLKSELERWQNGNFNVFIL
ADGKERMKKVQSILEDYDIEANLTGRPTETGGIFILDGGLSDGFELPLHRIAVITDAELF
KAKPKRRTRTQKMSNAERIKSYSEIKPGDYVVHAHHGIGKYIGIEKMSQGSIEKDYLEIH
FKGNDKLYVPTDKIDLIQKYIASGEKEPSLHKLGGTSWKRTKSKVSAAVKDIADDLIKLY
AQRESEKGFAFSKDDDLQRSFEDAFPYKETDDQLRSIEEVKQDMENIRPMDRLLCGDVGY
GKTEVAIRAAFKAVNDGKQVAFLVPTTILAQQHYETMKERFAGFPIEVSLLNRFRTRKEQ
TEALKGLKAGTVDVIVGTHRLLSKDVIYRDLGLLIVDEEQRFGVTHKERLKQLKTNVDVL
TLTATPIPRTLHMSMLGVRDLSVIETPPADRFPVQTYVMEHNFALIREAIEREMGRGGQV
FYLYNRVEDMTKRVDEIKQLVPDARVGYAHGQMSEAMLESTVLSFLEGEFDVLVTTTIIE
TGIDIPNVNTLIVHDADRMGLSQLYQLRGRVGRSNRVAYGYFLYQRDKVLTEVAENRLQA
IKEFTELGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDLYSQMLQEAIEEKRTGVVK
ADIPDVEVSLSMTAYIPEEYIRDSFQKIQMYKRVQAIDSEEDYTELVDEMIDRFGDLPFE
ADLLLRVARLKVWGRIAGVESIKKQKTKIEVRFTPEGTAKTDGAKLLSESMQFGRAIGFS
MDGDQLLLTIDEKHTGKQTGFDVLESLMKLLPGSTKETATSKSV
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacaggtgtgaaatcttggaagcacttattaattattacgaacaaaaaaatgac
atccatagactcgtagaagaattaaagagtgggaatgatagtcaattaatcgcgggctta
tcaggcggtgcaaagccagtgttttttcaatcgattcagcaatcgattgaaaaaccaatc
ctaattgtttcgcctaatcttttgcaggcacaacgtacatacgagaatttggtgaagatg
cttggcgactcttatgtacatctttatccggcggaagaattggtggcggcagagttttct
gtatcgagctatgagttacgggcacaaagaattgaaacaattgatcatatggtccgtgtg
ggaaagggtgtgtatataacacccattgcagggatgcgtagattattaccgcataagaaa
cgttggttagaaaatagcttatcaacaaaaattgatgacacaatcgatgtcgacctttgg
attgagaaattaacggcaatgaattacacgagacaggatatggttacagcaccgggggag
tttgctttacgcggtgggattttagacttgtatccccttcatctcgaaaatccggttcgg
atagagttatttgataccgatgtggattcgataaggattttctcagccgaggaccaacgc
tccattggaaagttggaatccgtttcaatattgcctgcaacagagtatgtatggactgaa
gaagatctacaaacgatttcagaaaagttagaatatgaactttcggtaagtttgaaaaag
gtgaagaacgaagagtctaaagaacttttaacgatgcatatctcacatgacattgcctta
atgaaagaaggaaacgttcctgaaggtatattaaagtacgcttcttttgcaaatgaacaa
ccgacctcattaggaacttatttttctacagatgggattgtcgtatttgatgagattgga
cgtattacagaggtccttgaatctttagaggcagaagaagaagaatggtccatttcgttg
gttgaagaagggaaaattgttcattctgcgaagttatcatttactttcgatgaaatcaat
aaaatgctgacacaacacaagctttatttatctttatttatccgaacaattccgggaata
actgtgagcaagacgatgacaatttcttgtaaaccgatgcaagagtttcacggacagatg
caaatgttaaaaagtgaactggaacgatggcagaacgggaattttaacgtgtttattctt
gctgacggcaaggaacggatgaaaaaagtacaatcgatacttgaagattatgacatagag
gcaaacttaacaggaaggcctacagaaacgggcggaatttttatcctagatggtggtctg
tcagatggttttgaattaccactccatagaatagccgtaattacagatgccgaattgttt
aaagcaaagccaaagcggcggactcgtacgcaaaaaatgtcaaatgcggagcggattaaa
agttattctgaaattaaaccgggtgactatgtcgttcacgcccatcatggaattggaaag
tacatcggtattgaaaagatgtcacaaggcagcatcgaaaaagactatttagaaattcat
ttcaaaggaaatgataaactttatgtaccgacggataaaatagatttaattcaaaaatat
atcgcttcaggcgaaaaagaaccatccttgcataagcttggtgggacatcttggaagcga
acaaagagcaaggtttctgctgcagttaaagatattgcagatgacctcattaaattatat
gcgcaacgtgaatccgaaaaaggatttgctttttcaaaagatgatgacttacagcgttcg
tttgaagatgcttttccatataaagaaacagatgaccagctacgctccatagaagaagta
aagcaggatatggaaaatattcgtccaatggatcgattgctttgcggagacgttggttat
ggaaaaacagaagtcgcaatccgagcagcatttaaagcggtaaatgacggaaagcaagta
gcctttttagtaccgacaaccattcttgcgcaacagcattacgagacgatgaaagaacgt
tttgcaggtttcccaatagaagtatctttgcttaatcgttttagaacgagaaaagaacag
actgaagcattaaaaggtttgaaagcaggaacggtggatgtaattgttggcacgcaccgt
ttactttcgaaagatgtcatttatcgagacttaggattgcttatcgtcgatgaagagcaa
cggttcggtgtgacacataaagagcgcttaaaacaattaaaaacgaatgtagacgtgctt
acattaacagcaacaccgattcctcgaacattgcatatgtctatgttgggcgtccgcgat
ttatcggttatcgaaacaccgccagcagaccgtttccctgttcaaacttatgtcatggaa
cataactttgccctaatacgagaagcaatcgaacgtgaaatgggacgtgggggtcaagta
ttttacttatacaatcgggtagaggatatgacgaaaagggtagatgaaattaaacaactc
gttcctgatgcacgtgttggttatgcgcacggacaaatgagtgaagcgatgctggagtca
acggttttaagttttcttgaaggtgaatttgatgttcttgtaacgacaacgattattgaa
acgggcattgacataccgaatgtgaacacattaattgtgcatgatgcagatcgaatggga
ttgtcacagctttatcagcttcgtggtcgggttggtcgttcaaaccgagttgcttatggt
tactttttatatcagcgtgataaagttttaacagaagtagcagaaaaccgtcttcaagcg
attaaagaatttactgagcttggttcgggctttaaaattgcgatgcgcgatctatcgatt
aggggagcgggaaatttattaggatcacaacaacatggatttatcgactctgttggattt
gacttatattctcaaatgttacaagaagcgattgaggagaagagaactggagttgttaaa
gcagatattcctgatgttgaagtatccctttctatgactgcttatattccggaagaatac
attcgggacagtttccaaaaaattcaaatgtataagcgggtgcaggcaattgatagcgaa
gaggactataccgagcttgtagacgaaatgattgatcgatttggcgatttaccatttgaa
gctgatttactccttcgtgttgcaaggttaaaagtatggggacgtattgccggagtggaa
tcgattaaaaagcaaaaaacaaaaatcgaagtgagattcacgcctgaaggaacagctaaa
acagacggcgcgaaattgctaagtgaatctatgcaatttgggcgcgctattggtttttct
atggatggcgaccaacttctgttaacgattgatgaaaagcatacaggaaagcaaactggt
tttgacgttctcgagtcattaatgaaattacttccgggttctaccaaggaaacagctact
tcaaaatccgtctaa
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