Sporosarcina ureilytica: BI350_13220
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Entry
BI350_13220 CDS
T08603
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
surl
Sporosarcina ureilytica
Pathway
surl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
surl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BI350_13220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
surl03019
]
BI350_13220
Messenger RNA biogenesis [BR:
surl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BI350_13220
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
CFAP54_N
Mur_ligase_C
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AOV08401
UniProt:
A0A1D8JI57
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Position
2668057..2669724
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AA seq
555 aa
AA seq
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MNVIKNNETGVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYSYL
ERNVDKIKGLFITHGHEDHIGGIPYLLRKVNVPVYGGKLALGLLRNKLEEHGLLRSTKMI
PIDEDDVIKFRKTSVTFYRTAHSIPDAFGVVVKTPSGNIVHTGDFKFDFTPVGEPADLTK
MAKIGGEGVLCLLSDSTNAEVPNFTLSERKVGDSLNEIFRKVNGRIIFATFASNIHRLQQ
VIEAAQEHGRKIAVFGRSMDNAIRIGRELGYIDAPEELFIDTHSLNRLQASEVMILCTGS
QGEPMAALSRIANGTHRQVQIHPGDTVIFSSSPIPGNTLSINKTINALFRAGAEVLHGSL
NNIHTSGHGSQEEQKLMLRLMKPKYFMPIHGEYRMMKMHTELAVDCDIQEENTFVLSNGD
VLALTENSARRAGRIPSGDVYIDGSGIGDIGNVVLRDRKMLSEDGLVIVVATIDKKKNRI
VSGPDLISRGFVYMRESGEMIQEAQRMLSKHVQRKLSNSAVQIPALKTEMIDVLGPYLYD
KTERKPMVLPVILEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtgattaaaaataatgaaacaggcgttttcgctctaggcggactaggcgaaatc
ggaaaaaatacgtacggtgtccagtttcaagacgaaatcatcttaattgacgccggtatt
aagtttcctgaagatgagttactcggaatcgattatgtgatacccgattactcctattta
gaaagaaatgttgacaaaattaaaggactttttattacacatgggcatgaagaccatatc
ggtggaattccttatttacttcgcaaagtaaatgtacctgtttatggcggaaaacttgct
cttggattactgcgtaataagcttgaggaacatggcctactacgttcaactaaaatgatt
ccaatcgatgaagatgatgtgattaagttccgtaaaacgtctgttacattttacagaact
gcacacagtattcctgatgcttttggcgttgttgtcaaaacgccttctggaaacattgtc
catacgggagactttaaattcgattttacgcccgttggagagcctgccgacttaacgaaa
atggcgaaaattggtggcgaaggcgtactctgtttattatcggatagtacaaatgccgaa
gtaccaaacttcaccctttctgaacgtaaggttggcgacagcctaaatgaaatctttaga
aaagtgaatggccgtattatttttgcaacgttcgcttctaatatccatagattgcaacag
gtcattgaagcagcacaagaacatggccgtaaaattgcagtttttggacgaagtatggat
aatgcgatacgaatcggtcgtgaacttggctatattgacgcaccagaagaattgttcatt
gatacacattctttaaatcgacttcaagcaagcgaagtcatgattctctgtacaggtagc
caaggagaaccgatggcggctctatcacggattgctaacgggacgcatcgacaagtacaa
attcatcctggtgatacggtaatattctcatcttccccaataccgggaaatacactaagt
attaataagacaattaacgcgttgttccgtgccggagccgaagtgttgcatggttcttta
aataatattcatacttccggtcatggttctcaagaagaacaaaaactgatgcttagactt
atgaagccgaaatattttatgcccattcacggtgagtatcgtatgatgaaaatgcataca
gaactcgctgtcgattgcgatattcaggaagaaaatacatttgtattaagtaatggtgac
gtactagcactgactgaaaatagtgctagacgtgcaggacgtatcccatcaggcgatgtc
tatatcgacggtagcggaattggagatattggaaatgtcgtgttacgggaccgtaagatg
ctttcagaggacggtttggtgattgtagttgctacgattgacaaaaagaaaaaccgcatc
gtttcaggtccggatcttatttcaagaggatttgtttacatgcgtgagtctggcgaaatg
attcaagaagctcagcgaatgttaagcaaacatgtacaacgaaaactttcaaattcagct
gttcaaattccagcattaaaaactgaaatgattgatgttttaggaccttacttatacgac
aaaacagagcgtaaaccaatggtcctccctgtcatcttagaagtataa
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