Streptococcus urinalis: NCTC13766_00590
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Entry
NCTC13766_00590 CDS
T07856
Symbol
deaD_1
Name
(GenBank) ATP-dependent RNA helicase, dead/deah box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
surn
Streptococcus urinalis
Pathway
surn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
surn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13766_00590 (deaD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
surn03019
]
NCTC13766_00590 (deaD_1)
03009 Ribosome biogenesis [BR:
surn03009
]
NCTC13766_00590 (deaD_1)
Enzymes [BR:
surn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13766_00590 (deaD_1)
Messenger RNA biogenesis [BR:
surn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13766_00590 (deaD_1)
Ribosome biogenesis [BR:
surn03009
]
Prokaryotic type
rRNA helicases
NCTC13766_00590 (deaD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
VEF31501
LinkDB
All DBs
Position
1:564336..565937
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AA seq
533 aa
AA seq
DB search
MKFTELDLSQDIQSAVVRAGFETPSPIQELTIPLAIEGKDVIGQAQTGTGKTAAFGLPTL
DKIDVDQNVVQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVFGGSSIEKQIKALRSGA
HIVVGTPGRLLDLIKRKALKLKDVKVLILDEADEMLNMGFLEDIEAIISQVPSERQTLLF
SATMPDPIKQIGIKFMKNPEHIKIKAKELTNVNVEQFYIRVKEHEKFDTMTRLMDVDQPE
LSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLNIIEKLTKK
QMKGLKPATAQEAFEAKKKVALKKIEKDFADQAIRENFEKFKGDAVKLASEFSPEELALY
VLSLTVQDPDMMPEVEIAREKPLPFKPSGKNGFGSKGKGGRGNRDRRRNGRDNDRKRGGY
KGDRRDERSNGKRDFKRTSSKNRKDFEHKDNKRPHRTSSEKKNGFVIRNKGER
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaattagacttgtcacaagatattcaatcagctgttgttagagctggt
tttgagacgccttcacctattcaggaattaaccattccacttgctattgaaggtaaagat
gttattggacaagcacaaacaggaacaggaaaaaccgcagcttttggattacctacatta
gataagattgatgttgaccaaaatgttgttcaagcacttgtaattgcaccaacacgtgaa
ttagcggtgcaaagtcaagaagaattatttagatttggtagagataaaggtgtcaaagta
agatctgtctttggtggatcaagtattgaaaagcaaatcaaagctctccgttcaggagct
catattgtagttgggacaccagggcgtttattagatttaattaaacgtaaagctttaaaa
ttaaaagacgtgaaagttcttattttggatgaagctgatgaaatgttaaatatgggattc
cttgaggatattgaagcaattatcagtcaagtaccttctgaaagacaaaccttacttttt
tcagcaacgatgccagaccctatcaaacaaattggtattaagttcatgaaaaatcctgaa
catatcaagattaaagctaaagaactaaccaatgtaaatgttgaacaattttatattcgc
gttaaagaacatgaaaaatttgatacaatgacacgtttaatggatgtcgatcaaccagaa
ttatccattgtctttggacgaacaaaacgacgtgttgatgaattaacaagaggtctaaag
attcgtggcttccgtgcagaaggtattcatggagatcttgaccaaaataaacgcctacgc
gttattcgtgattttaaaaatgatcaaattgatattttagttgctacagatgttgcggcg
cgtggtcttgatatttcaggagtgacacacgtctacaactatgatattccacaagatcct
gaaagctatgtccatcgaattggacgtactggtcgtgctggaaagtcaggacagtcaatt
acatttgtttccccaaatgaaatgggttatttaaacatcattgagaaattaaccaagaaa
caaatgaaaggcttaaaaccggcaactgcacaagaagcttttgaagctaagaaaaaagtt
gcacttaaaaaaatcgaaaaagattttgctgatcaagccattagagaaaactttgagaaa
tttaaaggtgatgctgtcaaattagcttctgaattttcaccagaagaattagcactatat
gttttaagtcttactgtgcaagatccagatatgatgccagaagttgagattgcccgtgaa
aaaccactaccatttaaaccttcagggaaaaatggctttggttcaaaaggtaaaggtgga
cgtggtaacagagatcgcagacgaaatggtcgtgacaatgatcgtaaacgtggtggttat
aaaggagatcgtcgcgatgagagatcaaatgggaagcgagatttcaaacgaacatcatca
aaaaatcgcaaagatttcgaacataaagataataaacgcccacatagaacttcaagtgaa
aagaaaaacggctttgttattcgaaacaaaggtgaaagataa
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