Streptococcus urinalis: NCTC13766_02295
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Entry
NCTC13766_02295 CDS
T07856
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
surn
Streptococcus urinalis
Pathway
surn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
surn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13766_02295 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
surn03400
]
NCTC13766_02295 (mfd)
Enzymes [BR:
surn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13766_02295 (mfd)
DNA repair and recombination proteins [BR:
surn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC13766_02295 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
AAA_16
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
VEF33117
LinkDB
All DBs
Position
1:complement(2116396..2119896)
Genome browser
AA seq
1166 aa
AA seq
DB search
MDIFELFGENKKLKDWYSKLESAKRQLVMGFSGSSKSLAMASAFNHTEQKLVIVTASQNE
ADKLVNDLSAVLPDQSIYQFFADDVAAAEFVFSSNEKTISRLETLQFLQNKAEKGIVVVS
VAGTKIHLQNPSIFKESQINLSVGDEVDLLDLVKQIRKLGYEQVSQVLKPGEFSRRGDIL
DVFGFNQDYPYRLEFFGDEVDGIRQFEVESQKSTQSFNMIKLTPVSDMILTEADFQRAIH
SFEKAQKIATGDMKAYVDELLDTCYHGYYHKDIRKFLSLFYDQEYSLFDYLDKDCLVFYD
DFQRIMDKNANFELETANLLTSDLQAGKSISSAHYFIENYQLLRNREHVTFFSNFHKGLG
NLKFDFMYQFTQYPMQEFFNQFPLLVDEVNRYSKSKATVLVQVDSQKSLDKLKKTLDEYD
LELTISNSDDIVKKAPQFIIGHLSNGFYFADEKIVLITEHEIFNKRVKRKIRRKNISNAE
RLKDYNELSKGDYVVHNVHGIGQFIGIETIEINGVHRDYVSIQYQNADRISIPVEQIEML
SKYVSADGKEPRISKLNDGRFQKAKQKVHQQVEDIADDLIKLYAERSQQKGFEFSPDDQL
QTEFDEDFAYVETEDQLRSIKEIKKDMESPHPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVAILVPTTVLAQQHYSNFKERFENFPVNIDVLSRFRSKKEQTETLDALKKGQIDIIIG
THRLLSKDVTFADLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSILG
IRDLSVIETPPTNRYPVQTYVLEVNPCVVREAIIREMDRGGQVFYVYNKVETIDQKVAEL
QELVPEASIGFVHGQMSEIQLENTLLDFINGDYDLLVATTIIETGVDISNVNTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFEMYSQMLEQAIAMKQGKTTIRQKGNAEISLQIDAYIP
TDYIDDEKQKIEIYKRIREIDQVADYQDLQDELIDRFGEYPDQVAYLLEIGLLKAYFDNA
FVELAERKENKVTVRFEKVSLQYYKTQDYFEALSKTHLKAKIGEFQGKIEIVFDVRNQKA
YNILEELMLFGNMLKTIKDRKENHSH
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggatatatttgaattatttggtgagaataaaaaattaaaagattggtattctaaactt
gaatctgccaaacgtcaacttgttatgggattttctggctcaagtaaatcgttagctatg
gcttcagcttttaatcatacagaacagaaattggtaattgttacagctagtcaaaacgaa
gctgataagttggtaaatgatttatcagcagttttaccagatcagagcatctatcaattt
tttgcggatgatgtcgctgctgcagaatttgtattctcgtcaaatgagaaaacgatttct
agacttgaaaccttacaatttttacaaaataaagcagaaaaagggatagttgttgttagt
gtagcagggactaaaattcatctacaaaatccttctatatttaaggaaagtcagattaat
ttatctgttggagatgaagtagatttactggatttggttaaacaaataaggaaattaggt
tatgagcaagtatctcaagtattgaagcctggagaatttagtcgtcgtggggatatttta
gatgtatttggttttaatcaggactatccatatagacttgagttttttggtgatgaggtt
gatggtattagacagtttgaagttgaatctcaaaaatcgactcagtcattcaatatgatt
aaattgacaccagtttctgacatgattttaactgaagctgattttcaaagagcaattcat
tcctttgaaaaagctcaaaagattgcaactggagatatgaaagcttacgttgatgaactg
ttagatacttgttatcatggttattatcataaagatattcgaaaatttttatcattattt
tatgatcaagaatactcactttttgattatttagataaagactgcttagttttttatgat
gattttcaacggatcatggataaaaatgctaattttgaattagaaaccgcaaatctacta
acttcagatttacaagccgggaaatctatctcatcggcacattattttattgaaaattat
cagttattaagaaatcgtgagcatgtcacattcttttcaaattttcataagggtttagga
aatttgaaattcgatttcatgtaccaatttacccaataccctatgcaagaattcttcaat
caatttcctctattggttgatgaagtcaaccggtattcaaagtcaaaagcgactgtttta
gttcaagtggattctcagaaatctcttgataagttaaaaaagacattagatgagtatgat
ttagagttgactatctcaaacagtgatgacattgttaaaaaagcaccacaatttatcatt
ggacatttatctaatgggttctattttgctgatgaaaaaatcgttttaattacagaacat
gaaatatttaataaacgtgttaagcgaaaaataagacgtaagaatatttcaaatgctgaa
cgactcaaggattataatgagctatctaagggagattatgttgttcataatgtccatggg
ataggacaatttattggaattgaaacgattgaaataaatggtgttcacagagattatgtc
agtattcagtatcaaaatgctgatcgtatctcaattcctgtggaacaaattgagatgctg
tcgaagtatgtttcagcagatggtaaagaacctagaataagcaaactaaatgatggccgt
tttcaaaaagcaaaacaaaaagttcaccaacaagttgaagacattgcagatgatctgata
aagctatatgccgaaagaagtcagcaaaaaggatttgagttttcacccgatgatcagtta
caaactgaatttgatgaagattttgcttatgtggaaaccgaagatcaattgagatcaatt
aaagaaattaaaaaagacatggaaagtccacatccgatggatagacttttagttggtgac
gttggatttggtaaaacagaagtagcgatgcgtgcggctttcaaagctgttaacgatcac
aaacaagttgcgatacttgtaccgacaactgttttagctcaacaacattactcaaacttt
aaagaaagatttgagaattttcctgtcaacatagatgttttaagccgtttcagaagtaaa
aaagaacaaacagaaactctagatgctctcaaaaaagggcagattgatatcattattggg
acacatcgtttgctttctaaagatgttacatttgctgatttaggacttattgttattgat
gaggaacaacgttttggtgttaaacataaggaaactttgaaagagctaaagacaaaagtt
gatgtattaaccctaacagcaacaccaattcctaggaccttacacatgtcaattttaggg
attagagatctctcagtaatagagactccaccgacaaatcgttatcccgttcaaacgtat
gttctagaagtcaatccttgtgttgtcagagaagccattattagagagatggataggggt
ggccaagtcttttatgtctacaataaggttgagacaatcgaccaaaaggttgctgaatta
caagaacttgttcctgaggcttcgatcggttttgttcatggacagatgagtgaaatccaa
ctagaaaatacgctattagacttcatcaacggcgactatgacctcttggttgcaacaacc
attattgaaacaggcgttgatatttctaatgtgaatactctctttattgaaaatgctgat
catatgggtttgtctactttatatcaattaagaggaagggtaggtcgctcaaaccgtatt
gcttatgcttatttaatgtatagaccagacaaaattttaacagaagtatctgaaaaacgt
ttagatgctatcaaagggttcaccgaattaggctctggattcaagatagcaatgcgcgac
ttatctattcgtggtgcaggaaatattttaggggcatcacaaagtggtttcattgactca
gttggttttgaaatgtattctcaaatgttagagcaagctattgctatgaaacaaggaaaa
accaccattagacaaaagggaaatgcagagatatcgttacaaatagatgcatatattcct
acagattacatagatgatgaaaagcaaaagatagaaatttataaacgtattcgcgaaatt
gatcaagtggcagattatcaggatttacaagatgaattaattgatcgatttggagaatat
cctgatcaagtagcttatttgttagagattggattactaaaagcctattttgataatgct
tttgttgaattagctgaacgaaaagagaataaagtaacagtgagatttgagaaagtatcg
ttgcagtattataagacacaagattactttgaagcactctccaagactcatctaaaagct
aaaattggtgaatttcaaggtaaaattgaaattgtttttgatgttcgaaatcaaaaagcc
tataacatcttagaagaattgatgctatttggtaatatgctaaaaacaattaaagataga
aaagaaaatcacagtcattaa
DBGET
integrated database retrieval system
