Candidatus Solibacter usitatus: Acid_0384
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Entry
Acid_0384 CDS
T00412
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sus
Candidatus Solibacter usitatus
Pathway
sus03410
Base excision repair
sus03430
Mismatch repair
sus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Acid_0384
03430 Mismatch repair
Acid_0384
03440 Homologous recombination
Acid_0384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sus03400
]
Acid_0384
DNA repair and recombination proteins [BR:
sus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Acid_0384
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Acid_0384
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Acid_0384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
SNCAIP_SNCA_bd
DUF2058
Motif
Other DBs
NCBI-ProteinID:
ABJ81396
UniProt:
Q02C20
LinkDB
All DBs
Position
484693..486441
Genome browser
AA seq
582 aa
AA seq
DB search
MAGISPRISPLSRWVLPAPDAAVVAALAAALKIGMPAARVLAARGFGDADAARRFLEPAF
EELHDPLSMRDMPAAIERIARAIRDRERILIYGDYDVDGTTSVVLLTKVIELAGGEARYH
VPHRLKDGYGMRPEVVEAAAEQGVKLIVSVDTGIRAGEVVRRANELGIDVIVTDHHLPET
ELPPALAVLNPNRLDCGYMEKNLCGAGVAFKVIQALLPHIGWPADKVRRVSESFLKLAAI
ATVADVVPLTGENRIIVACGLRGLGTVRNVGLRALLDVAGFTPDATPPNARQVAFQIAPR
MNAAGRMDTARAVVELFLTSDAERARELAKQLHEQNAERQAVEAEIRETCEQIAVDGAES
ALVYYAENWHRGVLGIVASRLVERLHRPVFVLSRNPEDGLAQGSGRSIPAFHLLEALESM
PELFLKFGGHKHAAGVTMEAARVVEFRERFNAFAATRLSAEDYRRRVEIDAVLELGEINE
QTTGELFGLAPFGHGNPPPMFAVLNVEVASSVVWKEKHLKLNVRQNGRGLSLKAWNFAAR
VGELPPGARVDLAFNLEEDAYSAARGYPAWAAILRDVKPAGI
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
ttggcgggtatttctccaagaattagcccgctctcgcgctgggtgctgccggcgcccgac
gccgccgtggtggccgcgctggcggctgccctgaaaatcggcatgccggcggcgagggtg
ctggccgcgcgcggattcggggacgcggatgcggcgcggcgattcctggagccggccttc
gaggaactgcacgatccgctcagcatgcgcgatatgccggcggcgatcgaacggattgcg
cgcgcaatccgcgaccgggaacgcatcctcatctacggcgattacgacgtagatgggacc
accagcgtggtgctgttgaccaaggtgatcgaactagccggcggcgaggcgcggtatcac
gttccgcaccggctgaaggatggctacggcatgcggcccgaggtggtggaggcagcggcc
gagcagggcgtgaagctgatcgtcagcgtggataccggaatccgcgccggggaagtggtg
cggcgcgcgaacgagctcggcatcgacgtgatcgtcaccgaccatcatcttccggagacc
gagttgccgcccgcgctcgcggtgctgaacccgaaccgtctggattgcgggtacatggag
aagaacctgtgcggggcgggagtggcattcaaagtgattcaggcgctgctgccgcacatc
gggtggcctgccgataaagtgcggcgggtatcggaatcctttcttaagctggcggcgatc
gcgacggttgccgacgtggtgccgctgacaggcgagaaccggatcatcgtggcgtgcggg
ttgcgcgggctgggcaccgtgcggaacgtggggctgcgggcgctgctcgatgtggccggg
ttcacgcccgatgcgacaccgccgaatgcgcggcaggtggccttccagattgcgccgcga
atgaacgcggccgggcgcatggacaccgcacgcgcggtggtggagttgtttctcacgagc
gacgcggagcgggcgcgcgagctggcgaagcagctgcacgaacagaacgccgagcgccag
gcagtggaagcggagatccgcgagacgtgcgagcagatcgcggtggacggggcggagagc
gcgctggtttactacgcggagaactggcatcgcggcgtgctcgggattgtggcgagccgg
ctggtggagcggctacatcgcccggtattcgtgctgagccgcaatccggaggacgggctg
gcgcaggggtcgggacgcagcattcccgcgtttcacctgcttgaggcattggaatcgatg
cccgaactcttcctgaaattcggcgggcacaaacacgcggcgggggtcacgatggaagcg
gcgcgagtcgtggaatttcgcgagcgtttcaatgcgttcgcggcgacgcggctgagtgcc
gaagattaccggcggcgcgtggaaatcgacgccgtgctggagttgggagagatcaacgag
cagacgaccggggagctgttcgggctggcgccattcgggcatgggaatccgccgccgatg
ttcgcggtgctgaatgtggaagtcgcgagttcggtggtgtggaaggaaaaacacctgaag
ctgaatgtccggcaaaatgggcgcggtctttcgctgaaggcctggaacttcgcggctcga
gtaggtgaactgccgccgggagcgcgagtggacctggcgttcaatctggaagaggatgcc
tattcggcggcacgcggatatcctgcgtgggcggcaattttgcgcgacgtgaaacccgcg
ggaatctga
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