Candidatus Solibacter usitatus: Acid_5242
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Entry
Acid_5242 CDS
T00412
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sus
Candidatus Solibacter usitatus
Pathway
sus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acid_5242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sus03019
]
Acid_5242
03016 Transfer RNA biogenesis [BR:
sus03016
]
Acid_5242
Enzymes [BR:
sus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Acid_5242
Messenger RNA biogenesis [BR:
sus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Acid_5242
Transfer RNA biogenesis [BR:
sus03016
]
Prokaryotic type
tRNA degradation factors
Acid_5242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
S1CSD-TOTE-2
OB_Dis3
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
ABJ86195
UniProt:
Q01VX0
LinkDB
All DBs
Position
complement(6575998..6578286)
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AA seq
762 aa
AA seq
DB search
MTDASIVAHISRLPHARANFKQLVREMGLKGAKRDELDTALDRLVARGELIELRSGEYTV
TSLSREFVVGRLNLHRDGYGFLIADRQIPRVVGDIFIPPDSASQAMHGDRVLVRIARIEP
DGRADGNIVKVLKRAHATVVGEFKIGRRGCYVVPHDERLQQWVDIPEGMEFPPAGASVDR
IGVTAPKVATVEQLDGMIVNVEIMEYAGRGESPVGRVVEILGHPDDFGVDVEIVIRKHHL
PHQFPPEVIEQAQAIPGVIPPAEFEGRRDFRGMDIVTIDGETARDFDDAVWVDKLPSGNY
VLHVHIADVSHYVRPGTPIDREALLRGTSVYFPDRAVPMLPFELSTNLCSLVPLEDRLVL
SALMEIDHRGEVVRQEFTEGVIRSVARMTYTNVHKLLEGDQVLRERYKPLVPRFELMQEL
ALVLNRKRVRRGSIDFDLPEPLIEFDDLGAMIGVTRAPRNIANRLIEEFMLAANESVAGH
LENAGIASIYRIHEKPDPKRVMEFEEVAAHFGVSLGVGAIEVKRFKVTDKRRDGTKKQQA
IVLADNTNINSRHYQKLVAKIEGKPEERILSFLMLRSLRQARYSTENTGHFALAADTYTH
FTSPIRRYPDLIVHRLLRAVLLGKPTPDESELGPIADDCSQSERRAADAERELVEWKKVK
FMADRVGEDFDALVISTTKYGLFVELTNLFIEGLVPIDTLPDDQYTYQENVRKVVGKRTR
RQFSIGDKLRVVLDRIDANDRKLQFSIFEVVPQRTKQKRRPR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgcgtccatcgtcgcccacatttcccggctgccccacgccagggcaaacttc
aagcagttggtccgcgaaatggggttaaaaggtgcgaaacgcgacgagctggataccgcg
ctcgatcgcctcgttgcgcgcggcgagctgattgaactgcgcagtggcgagtatacggtc
acctccctgagccgcgaatttgtggtgggccggctcaacctgcatcgcgacggctacggc
tttctgattgccgacaggcagattccacgcgtcgtcggcgacatcttcatcccgcccgac
tccgcttcccaggcgatgcacggcgaccgcgtgctcgtccgcatcgcgcgtatcgagccc
gatggccgcgccgacggcaatatcgtaaaggtgctgaaacgcgcccatgccaccgtggtc
ggcgaattcaaaatcgggcgccgcggatgttacgtcgtgccgcatgatgagcgcctgcag
cagtgggtggacatccccgaaggcatggagttccctccagccggagcctccgtggaccgc
atcggcgtcaccgctcccaaggtcgccaccgtcgaacagctcgacggcatgatcgtcaat
gtggagattatggaatatgccgggcgcggcgaatcaccggtcggacgggtcgtcgaaatc
ctcggacaccccgatgatttcggggtcgatgtcgagatcgtcatccgcaagcaccacctg
ccgcaccagtttccgcccgaagtcattgagcaggcccaggccatccccggcgtgatcccg
cccgccgaattcgaaggccgccgcgacttccgcggcatggatatcgtcaccatcgatggc
gaaaccgcgcgcgatttcgacgacgccgtctgggtggacaaactccccagcggcaactac
gtcctgcatgttcacatcgccgatgtcagccattacgtgcgtcccggtactcccatcgac
cgggaggccctgctccgcggcaccagcgtctattttcccgaccgcgccgttccgatgctg
cccttcgagctttccaccaacctctgctcgctcgtgccgcttgaggaccgcctagttctc
tcggcgttgatggagatcgatcaccgcggtgaagtcgtccgccaggagttcaccgagggc
gtgatccgcagcgttgcccgcatgacttacaccaacgtgcacaaactgctcgaaggcgac
caggttctgcgcgagcgctacaagcccctggtgccgcgtttcgagctgatgcaggaactc
gccctggtgctcaatcgtaagcgtgtgcgccgcggttcgattgacttcgatcttccggag
ccgctgatcgagttcgacgacctcggcgccatgatcggcgtcacgcgcgccccgcgcaat
atcgccaaccgccttatcgaagaattcatgctggccgcgaatgaaagcgtggcgggccac
ctggagaatgccggcatcgcttccatttatcgaattcacgagaagcccgaccccaaacgt
gtcatggaattcgaggaagttgccgcccacttcggcgtgtcgctcggcgtcggcgccatc
gaggtcaagcgcttcaaggttacagacaagcgccgcgacggcaccaagaaacagcaggcc
atcgtgctcgctgacaataccaacatcaactcgcgccactaccagaagctcgtcgccaaa
atcgaaggcaagcccgaggagcgcatactcagcttcctcatgttgcgctccctgcgccag
gcgcgctacagcaccgagaacaccggccactttgctctcgccgccgacacctacacgcat
ttcacatcgcccatccggcgctatcccgacctcatcgtgcatcgtctgctgcgcgccgtg
ctgctcggcaagccgacccccgacgagagtgagctcggcccaatcgccgacgattgctcc
caatccgaacgtcgcgccgccgacgcggagcgcgaactggtggagtggaagaaagtgaag
ttcatggccgaccgcgtcggcgaagatttcgacgcgctggtcatctccaccaccaagtac
ggcctcttcgtggaactcaccaacctgttcatcgagggccttgtccccatcgatacgctg
cccgacgatcagtacacctaccaggagaacgtccgcaaggtggtcggcaagcggacccgc
cgccaattttcgatcggcgacaaactacgcgtggtcctcgaccgcatcgacgccaacgat
cgcaaactccagttctcgatcttcgaagtcgtcccgcagcgcacgaaacagaagcgccgc
ccacggtaa
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