Candidatus Solibacter usitatus: Acid_7421
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Entry
Acid_7421 CDS
T00412
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sus
Candidatus Solibacter usitatus
Pathway
sus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Acid_7421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sus03400
]
Acid_7421
Enzymes [BR:
sus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Acid_7421
DNA repair and recombination proteins [BR:
sus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Acid_7421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABJ88330
UniProt:
Q01PU0
LinkDB
All DBs
Position
complement(9310908..9314333)
Genome browser
AA seq
1141 aa
AA seq
DB search
MLRRVSAGENASLSGLTTTAKALYAVLLWQSSGRPLIIVVDGNKQAEALAEAVNTFFSLL
VADDKYGPQLLPALDVLPMQALSPHAEICEQRAIGLWSLATKRSPITIMPVTSALLRIEP
GDFYRQLALRLRVGEELPLEEVVAHLESIGYTRREPVEMVGEYSVRGGILDVFPPEAQKP
VRIDLFGDQVESIRRFDVESQRSVLKVEDCLLLPLTEYQKSRPFLVELNELMHEADIPGR
DLPPPGETFPGWELIAPMLRPRNASVFGLLEKPVVIWDEPEQVLGAAKRLWTRLEQIERS
PAYDPDRIFFRWEDLEKQAGAGPQVKFQQIDIGWSPTGEATSAHVPTRPSMTFHGNIQVA
IAEARTLVESGQKVAFFASATGELERMADILNEYGIPYQLGLETSESTPAYLAQRAYLSG
SSASIYLVKGLIRHGTAFPESKLVLFGSEDLFETSDLVSRGPSSKTARETFSADIIDLKP
GDYVVHSEHGVAQYLGLREISGGENQGDYMVLEYSGGAKLYVPLTRIDLVQRFRGGGETK
PALDRMGGATWTRTKGRIKAKMRDMADELLKLYASRKMAEGFNYSSDSNWQREFEDAFEF
SPTRDQLTAISEIKRDMESTQPMDRLLCGDVGYGKTEVVMRAAFKALGDGKQVVVLAPTT
VLAFQHFETFKRRFQPFPVRVEMFSRFRSPKEIKAGLVDLAEGKIDIAIGTHRLLSQDVV
MRDLGLVLVDEEQRFGVKHKERLKQMKRAVDVISMSATPIPRTLHMSLLGLRDMSVIETP
PKDRLAIHTVVAPYQPELIRQALELELGRGGQVYFLHNRVDSIWMRAASLQELVPGARIG
VGHGQMGEAELEKTMLQFMRHEFDILVCTTIIENGLDIPLANTMIIENAERYGLSELYQL
RGRVGRSNRRAYAYLLVPPDTELTEIARKRLAALKEFSDLGAGFKIAALDLELRGAGNLL
GGEQHGHINSVGFDTYVRLLEETVRELKGEEVVPEIHSALNLNLDIRIPNEYIGDENQRL
RAYRQIANSANAEARDRAEKELEDRYGPVPEAVRNLLAYSALKTLAEQIGVEAVDRRHNV
LNIKFRKETRVDPARLMNIVSKTRGAQFTPAGVLLLPLDGQMAAGEILRFLGEKLEQLRA
S
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcgccgcgtgagcgcgggcgagaatgcatccctgtccggactcaccaccaccgcc
aaggcgctttacgcggtgctgttatggcagtcctccgggcgtcctctgatcatcgtagta
gacggtaacaagcaggccgaggcgctggccgaagccgtcaataccttcttctccctgctg
gtggccgacgacaagtatggcccccaactccttcccgcactggatgttctgcctatgcag
gccctctctccgcacgccgaaatctgcgagcagcgagccatcgggctgtggagcctagcc
accaaacggtcgccgattacgatcatgcccgtgacctcggcgctcctgaggatcgaaccg
ggcgatttctaccgccagcttgcgttacgccttcgggtcggcgaggaactgccgctcgaa
gaagtggtcgcccacctggagagcatcgggtacacgcggcgcgaaccagtggaaatggtc
ggcgaatactcggtccgcggcggaatcctcgatgttttcccgcccgaggcgcagaagccc
gtgcgtatcgatctcttcggcgatcaggtggagtcgatccggcgcttcgacgtggagtcg
cagcgatcggttctgaaggtggaagactgccttctactaccgttgacggaataccagaaa
tcgcggcccttcctggtggaattgaacgagttgatgcatgaggcggacatcccgggccgc
gatctgccgccgcccggcgagacgttccccggctgggaactgatcgctcccatgctgcgg
ccccggaatgcctcggtcttcgggctgctggagaagccggtcgtgatctgggacgagccg
gagcaggtcctcggcgccgccaaacgcctgtggacccggctggagcagatcgagaggtca
cccgcatacgaccccgacaggattttcttccgttgggaagacctggagaagcaggccggc
gccggtccccaggtgaagttccagcagatcgatataggctggtcgcccacgggcgaggcc
accagcgcgcatgtgccgacgcggccgtcgatgaccttccacgggaacatccaggtggcc
atcgcggaggctcggacgctggtggagtccgggcagaaagtggcctttttcgcttccgct
acgggcgaactggagcgtatggcggacatcctgaatgagtacgggatcccgtaccaactg
gggctggagacgtccgaatccacgccggcgtacctggctcagcgagcctatttgtcgggc
tcgtcggccagcatctacctggtcaaaggcctgatccgccacggcaccgccttcccggaa
tcgaaacttgtactatttgggtcggaagatctgtttgagacttccgatttagtctcccga
gggccttcctcgaagaccgcgcgcgagaccttttccgccgatattatcgacttgaagccc
ggcgactacgtggtccactccgagcacggcgtagcgcaatacctggggctccgggaaatc
tccgggggcgaaaatcagggcgactacatggtcctggagtactccggcggagcgaaactg
tacgtgccgctcacccggatcgacctggtgcagcgcttccgtggcgggggcgagaccaag
ccggcgctcgaccggatgggcggcgccacatggacgcgcaccaaggggcggatcaaggcc
aaaatgcgcgatatggcggatgagctgctcaagctctacgcctcgcggaagatggccgaa
ggctttaactactcttccgatagtaattggcagcgcgagtttgaggacgccttcgaattt
tcgccgacccgcgatcagttgaccgcgatctccgagatcaagcgcgatatggagagcacc
cagcccatggaccgcctgctctgcggcgatgtgggctacgggaagaccgaagttgtgatg
cgggcggccttcaaagcgctaggcgatggcaagcaggtggtcgtcctggcccccactacg
gtgctggcattccagcacttcgagactttcaagaggcgcttccagcccttcccggttcgg
gtggaaatgttcagccgctttcgctccccgaaggagatcaaggcaggtctggtggatctg
gctgaggggaagatcgacatcgcgatcggcacccaccgcttgctctcgcaggatgtggtc
atgcgcgacctgggtctggttctggtggacgaggaacagcgcttcggggtcaagcataag
gaacgcctgaaacagatgaagagggcggtggacgtgatcagcatgagcgccaccccgatc
ccgcgtacgctacacatgtcgttgctgggtctccgcgacatgtccgtgattgaaactcct
cccaaggatcggctggcgatccatacggtagttgcgccctaccagccggaactaatccgg
caggcgctggagttggaacttgggcggggtggtcaggtctatttccttcacaatcgcgtg
gactccatctggatgcgcgccgccagcctgcaggaactggtgcccggcgcccgaattggt
gtcggtcacgggcaaatgggcgaagccgaactggaaaaaaccatgctccagttcatgcgc
cacgagttcgatattctggtgtgtactacgattatcgaaaatggcctcgatattccgctg
gcgaacaccatgatcatcgaaaatgctgagcgctatgggctttccgagctctaccagctg
cgcgggcgcgtcggccgttccaaccgccgggcgtatgcgtacctgctggtgccgcccgat
acggagctcacggagatcgctcgcaagcggctggccgcgctcaaggaattcagcgattta
ggagccggattcaagatcgcggcgctcgacctggagctgcgcggcgcaggcaacctgctc
ggcggcgagcagcacggtcacatcaactccgtcggcttcgacacctacgtgcggctattg
gaagagacggtgcgcgaactgaagggtgaggaggtggttccggagatccactctgccctc
aatctaaaccttgacatccgcatccccaacgaatacatcggggacgaaaatcagcggctt
agggcgtaccggcagatcgccaactcggccaacgccgaggctcgagaccgtgccgaaaag
gaactagaggatcgatatggcccagttccggaggcggtgcgcaacctgcttgcgtactcg
gcgctcaaaaccctggccgaacagatcggggtggaagctgtggataggcgccataacgtg
ttgaatataaagttccgcaaggagacgcgtgtggatccggcgcggcttatgaatattgtt
tccaaaactcgcggcgcgcagttcactccggcaggcgtattgctattacctctggacgga
caaatggccgcaggtgaaattctgcgcttcctgggcgaaaaactggagcagcttagggct
tcgtaa
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integrated database retrieval system
