KEGG   Candidatus Solibacter usitatus: Acid_7542
Entry
Acid_7542         CDS       T00412                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
sus  Candidatus Solibacter usitatus
Pathway
sus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Acid_7542
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sus03019]
    Acid_7542
Enzymes [BR:sus01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Acid_7542
Messenger RNA biogenesis [BR:sus03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Acid_7542
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 Flavi_DEAD
Other DBs
NCBI-ProteinID: ABJ88450
UniProt: Q01PH0
LinkDB
Position
complement(9448302..9449570)
AA seq 422 aa
MTNFSELPLSAQLKSNLAKNNFTEPTPIQSLAIEPALAGKDIVATAQTGTGKTLAFLLPT
IQLLSTEPRQPGVRALILTPTRELALQINEALLQIARGTGIRAAVAVGGLNERSQLRDIR
GGANIVVATPGRLYDFMSRGLINLTTVRMLILDESDRMLDMGFLPTIKRIIAAMPAERQT
LLFSATLESSVKQLVETHVRNAVRIELGSISKPSEQVDLHLYEVDQDRKFGLLEMMLREE
QGSFLVFARTKHGADKLAKKLAQSGFKSAAIHGDRSQNQRIQALKGFQEGYYRVLVATDV
AARGIHVEGISHVVNFDLPQVPEDFIHRVGRTGRAGAKGTASTFATRSERSEIGRIERTL
SVKLKRREVSASIVAAPRKESSAVIVLPHAKRAEHSRPEQGRNKSFRSFSPKSGRRPVRR
AV
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgacaaacttttctgaactgcctctttctgctcaattgaagagcaacctcgcgaagaac
aacttcaccgagccaaccccaatccagagcctggctattgagcccgcgctcgcaggcaaa
gacatcgtcgccacggcccagaccgggaccggcaagacgctggccttcctgctgccaacc
atccagctgctgtccaccgaaccgcgccaacccggcgtgcgcgccctgatcctcactccg
acgcgggaactcgcgttgcagatcaatgaagcgctgttgcagatcgctcgcggcaccggc
attcgcgccgcggtcgcggttggcggactgaacgaacggtcccagctccgcgatatccgc
ggcggcgccaacatcgtggttgccacccccggccgtctctacgattttatgagccgcggc
ctgatcaacctgaccaccgtccgcatgctgattctcgatgaatccgaccgcatgctcgac
atgggcttcctgcccaccatcaagcgcatcatcgccgcgatgccggcggagcgccagacg
ctgctcttctccgcaacgctcgaatcctccgtcaagcagctcgtggaaacccacgtccgc
aacgcggtgcgcatcgagctcggctccatcagcaagccctccgagcaggtggacctgcac
ctctacgaagtggaccaggaccgcaaattcggcctgctcgaaatgatgcttcgggaagag
cagggctccttcctggttttcgcccgtaccaagcatggcgccgataagctggccaaaaag
ctggcgcaatccggctttaaatccgccgccattcacggcgaccggagccagaatcaacgc
attcaggcgctcaaaggcttccaggaaggctactaccgcgtcctggtggcaaccgatgtt
gccgcccgcgggattcacgtcgagggcatctcgcacgtcgtgaatttcgatctgccgcag
gttcccgaggacttcattcaccgcgtgggccgcaccggccgcgccggcgccaagggtacc
gcctccacgttcgctacgcgtagcgaacgctcggagatcggccgcattgagcgcacgctt
tcggtgaagttgaagcgccgcgaagtgtcggcctcgatcgtcgccgctccgcgcaaggaa
tcctccgcggtgatcgtgcttcctcacgccaagcgtgccgagcacagccgccccgagcag
ggcaggaacaaatccttccgcagcttttctccgaaatccggacgccgcccggttcgccgc
gccgtctaa

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