Candidatus Solibacter usitatus: Acid_7759
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Entry
Acid_7759 CDS
T00412
Name
(GenBank) 3' exoribonuclease
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sus
Candidatus Solibacter usitatus
Pathway
sus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acid_7759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sus03019
]
Acid_7759
03016 Transfer RNA biogenesis [BR:
sus03016
]
Acid_7759
Enzymes [BR:
sus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Acid_7759
Messenger RNA biogenesis [BR:
sus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Acid_7759
Transfer RNA biogenesis [BR:
sus03016
]
Prokaryotic type
tRNA degradation factors
Acid_7759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
ABJ88657
UniProt:
Q01NW3
LinkDB
All DBs
Position
complement(9739445..9741550)
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AA seq
701 aa
AA seq
DB search
MHHIVEVDLGDRKITLETGKMAKQANGAVVVRSGDAVVLVTACMADQPKPSAGFFPLTVD
YREYTYAAGKIPGGFIKREGRLSEKEVLTCRLIDRPIRPLFPEGFMNETQIIAMVLSADP
EQDPNSLAIVGTAAALAISDIPFQYVMAGVRVGMRDGQYTANPTYTEGRASKLNIVVAGT
EEGIVMVEAGAQEVSEAEVLGAIEFGHECCKKIAAGIRQLMKLCGKTKREFVSPVLDETI
YAEVEKQARVDLTDALNTEKHEKLASYALVASVKKRTIEALPDEQKEQGAKCFDALKERI
FRDDMLKKHRRPDGREFDQIRQITIETGVLPRVHGSTLFTRGETQALVTVTLGTKDDEQR
IELLEPGEASKRFMLHYNFPPFSVGEVGFMRGAGRREIGHGALAERALTALIPGEDKFPY
TMRVVSDTLESNGSSSMAAICGGSLALMQAGVPMTAHVGGVAMGLVMEGKDYAILTDIAG
AEDHYGDMDFKVAGTRDGITGMQMDIKVPNITTAIMKEALEQARRGRLFILDKMYEAMPQ
ANTAISQYAPRIYTLHIPTDKIRDVIGPGGKVIRGIIEQTGVKIDVEDDGTIHVASADEA
SANKAIQIISDLTATAEIGKTYLGKVVRLVDFGAFVEIFPGTDGLLHISEIAENRIKDVR
DELKEGDQILVKCLALEGNKIKLSRKAVLKEQREKMKQGKE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgcatcacatagttgaagtagacctgggcgatcgcaagattacccttgagacgggtaag
atggccaagcaggcgaacggcgccgttgtcgttcgttcgggtgacgcggtagttctcgtc
accgcttgcatggcagaccagcctaagccgtcggccgggtttttcccgctcaccgtcgat
tatagagaatacacttacgccgccggtaagatccccggtggctttatcaaacgcgagggc
cgcctctccgaaaaagaggtcctcacctgccggttgatcgatcgtccgatccgccccctc
ttccccgagggtttcatgaatgaaacccagatcatcgccatggtgctgtccgcggatccc
gaacaggatcccaattcgctcgcgattgtgggcacggcggctgcgctggcgatttccgat
atccccttccaatacgtgatggccggcgtgcgcgtcggtatgagggacgggcagtacacg
gcaaacccaacgtacaccgaggggcgcgcttccaagctgaacatcgtggtcgcgggcacc
gaagagggcatcgtgatggtggaagcgggcgcgcaggaggtctccgaggcggaggttctg
ggcgcgatcgagttcggccacgaatgttgcaagaagatcgcagcgggcattcgccagttg
atgaagctgtgcggtaagaccaagcgcgaatttgtttccccggtgctggatgaaaccatc
tacgccgaggtggagaagcaggcgcgggttgacctgaccgatgcgctgaacaccgagaag
cacgaaaagctggccagctacgcgctggtggcgtcggtgaagaagcggaccatcgaagcg
ctgcccgacgaacagaaggagcagggcgcgaagtgtttcgatgcgctaaaagagcgcatc
ttccgcgacgatatgctgaagaagcatcgccgtccggacggccgcgagttcgaccagatt
cgccagatcacgatcgagaccggggtcctgccgcgcgttcacggctcgacgctgttcact
cgcggtgagacgcaggcgctggtgacggtgacgctgggcacgaaggacgatgaacagcgc
atcgagctgttggaaccgggtgaggccagcaagcgcttcatgctgcactacaacttcccg
ccgttcagcgtgggcgaagtcggtttcatgcgcggcgcaggccgccgggaaatcggccac
ggagctttggcggagcgcgccctgacggcgcttatccccggcgaagacaaattcccgtac
acgatgcgcgtggtcagcgacacactggagagcaatggttccagctccatggctgcgatc
tgcggcggttcgctggcgctgatgcaggccggcgttccgatgacggcgcatgtgggcggc
gtggcgatgggcctggtgatggaaggcaaggattacgccatcctgaccgacatcgcgggc
gcggaagatcattacggcgatatggatttcaaggtcgccggcacgcgcgatggcattacc
gggatgcagatggacatcaaggtcccgaacatcacgacggccatcatgaaggaagcgctg
gaacaggcgcggcgcgggcggttattcatcctcgacaagatgtatgaggcgatgccgcaa
gccaataccgcgatcagccagtacgcgcctcgaatttacaccctgcacattccgaccgat
aagattcgcgacgtgattggacctggcggcaaagtgattcgcggcatcatcgaacagacg
ggcgtgaaaatcgacgtcgaggacgatggcacaattcatgtggccagcgcggatgaagcc
agcgcgaacaaggcgatccagatcatcagcgatctgaccgccacggcggagatcggcaaa
acctatctcggcaaagttgtccggctcgtcgatttcggcgcgttcgtggaaatcttcccg
gggaccgacggtctgctgcacatcagcgagatcgccgagaaccggatcaaggatgtccgc
gacgagctgaaggaaggcgatcagattctggtcaagtgcctggcactcgaaggcaacaag
atcaaactgagccgcaaagcggtgctcaaagagcagcgcgagaagatgaagcaaggcaaa
gagtaa
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