KEGG   Sulfitobacter sp. S190: K3756_07010
Entry
K3756_07010       CDS       T10858                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
susq  Sulfitobacter sp. S190
Pathway
susq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:susq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    K3756_07010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:susq03019]
    K3756_07010
Messenger RNA biogenesis [BR:susq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     K3756_07010
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: UWR23704
LinkDB
Position
1363710..1365377
AA seq 555 aa
MSSERLIYLPLGGAGEIGMNAYVYGYGRPGKERLIVVDLGVAFPDMDTSPGVDLIIADIA
WLVERRDRIEAIFVTHAHEDHVGGVAHTWDKLQAPIYARTFTANIARRKMDEYGHPDDAV
RIASPWPETIEAGPFKVGFQPISHSIPESSALVIDTPAGRVVHSGDFKVDLTPGVGEPFD
PAAFEDIAKDGVKALVCDSTNVFSPDAGRSEATIGPDIEALVASAKGMVVATTFASNVAR
VKTLAEAGQRAGRSIVLLGRAMKRMVDAAQETGVLADFPGTVSPEAARDIPRENLMLLVT
GSQGERRAASAQLARGKYMGLEMQEGDMFLFSSKTIPGNEKGVIRIMNQFSEMGVDVVDD
SSGKYHVSGHANRPDLETLHDIIKPQVLIPMHGEHRHLREHVKIADGKGITGVLAVNGMM
VDLSGNAPKIAEYIDTGRTYLDGSVQYGAMDGVVRDRIRMALNGHLTVTVIMDDEDEPLG
DPWVDVMGLPETGNSRAALVDVVEADLSQWLGRQKAKTLRDDEALNDGLRKAARQSAFGE
IGKKPEVTVVVSRLS
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgagcagcgaacgattgatttatctgcccctcggtggggcaggcgaaattggcatgaac
gcctatgtctacggctatggccgccccggtaaggagcggttgatcgtggtggaccttggc
gtcgccttccccgacatggataccagccccggcgttgacctgatcatcgccgacatcgcg
tggctggtcgaacggcgtgaccggatcgaagcgatctttgtcacccacgcccacgaagat
cacgtgggcggtgttgcccacacgtgggacaaactgcaggccccgatttatgcgcggacg
tttaccgccaacatcgcgcgccgcaagatggacgaatacggccatcccgatgatgcggta
cgcattgcgtcgccttggcccgaaacaatcgaggccggccccttcaaggttggcttccag
ccgatttcccactccatccccgaaagcagcgcgctcgtcatcgacacgcctgcggggcgg
gtcgtgcattcgggcgacttcaaggtcgatctgacgccgggcgtcggcgaacctttcgat
cctgccgcttttgaggacatcgccaaggacggcgtcaaggcgctggtgtgcgacagcacg
aatgtcttcagccccgatgcgggccgctctgaggccacgatcggccctgacatcgaagct
ctggtcgcctcggccaagggcatggtcgtggccacgacattcgcctccaacgtggcgcgt
gtgaaaacactggccgaagcgggccagcgggcagggcgctctatcgtgctgttgggccgt
gcgatgaaacgcatggtcgacgcggcacaggaaaccggcgtactggccgacttccccggt
accgtcagccccgaagccgcacgcgacattccgcgcgaaaatctgatgcttctggtcacc
ggcagccagggcgaacgccgggccgcctccgcacagcttgcgcggggcaagtacatgggg
ctggaaatgcaagagggcgacatgttcctcttttcctccaagaccatcccgggcaacgaa
aagggcgtgatccgcatcatgaaccagttctcggaaatgggcgtggatgtggttgacgac
agttcgggcaaatatcacgtgtcgggccacgccaaccgtcccgatcttgaaacgctgcac
gacatcatcaagccgcaggtgctgatcccgatgcacggcgaacaccgccatctgcgcgaa
cacgtgaaaatcgccgacggcaaaggcatcaccggcgtgcttgcggtcaacggcatgatg
gtcgatctgtccggcaacgcgcccaagatcgccgaatacatcgacaccggccgcacctat
ctcgacggctcggtgcaatacggtgcgatggacggtgtcgtgcgcgaccgcatccgcatg
gcgctgaacggtcatctgaccgtgacggtcatcatggacgacgaggatgaaccgctcggt
gatccgtgggtcgacgtgatgggcctgcccgaaacgggcaacagccgcgccgcactggtc
gatgtggtcgaagcggacctgagccagtggttgggtcgtcaaaaagccaaaacgctgcgc
gacgacgaggcgctgaacgacggtctgcgcaaagcggcacggcaatccgcctttggcgag
atcggcaaaaagcccgaagtcaccgtggtggtcagccgtctgagctga

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