Sulfitobacter sp. S190: K3756_07010
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Entry
K3756_07010 CDS
T10858
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
susq Sulfitobacter sp. S190
Pathway
susq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
susq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3756_07010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
susq03019
]
K3756_07010
Messenger RNA biogenesis [BR:
susq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K3756_07010
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UWR23704
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Position
1363710..1365377
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AA seq
555 aa
AA seq
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MSSERLIYLPLGGAGEIGMNAYVYGYGRPGKERLIVVDLGVAFPDMDTSPGVDLIIADIA
WLVERRDRIEAIFVTHAHEDHVGGVAHTWDKLQAPIYARTFTANIARRKMDEYGHPDDAV
RIASPWPETIEAGPFKVGFQPISHSIPESSALVIDTPAGRVVHSGDFKVDLTPGVGEPFD
PAAFEDIAKDGVKALVCDSTNVFSPDAGRSEATIGPDIEALVASAKGMVVATTFASNVAR
VKTLAEAGQRAGRSIVLLGRAMKRMVDAAQETGVLADFPGTVSPEAARDIPRENLMLLVT
GSQGERRAASAQLARGKYMGLEMQEGDMFLFSSKTIPGNEKGVIRIMNQFSEMGVDVVDD
SSGKYHVSGHANRPDLETLHDIIKPQVLIPMHGEHRHLREHVKIADGKGITGVLAVNGMM
VDLSGNAPKIAEYIDTGRTYLDGSVQYGAMDGVVRDRIRMALNGHLTVTVIMDDEDEPLG
DPWVDVMGLPETGNSRAALVDVVEADLSQWLGRQKAKTLRDDEALNDGLRKAARQSAFGE
IGKKPEVTVVVSRLS
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgaacgattgatttatctgcccctcggtggggcaggcgaaattggcatgaac
gcctatgtctacggctatggccgccccggtaaggagcggttgatcgtggtggaccttggc
gtcgccttccccgacatggataccagccccggcgttgacctgatcatcgccgacatcgcg
tggctggtcgaacggcgtgaccggatcgaagcgatctttgtcacccacgcccacgaagat
cacgtgggcggtgttgcccacacgtgggacaaactgcaggccccgatttatgcgcggacg
tttaccgccaacatcgcgcgccgcaagatggacgaatacggccatcccgatgatgcggta
cgcattgcgtcgccttggcccgaaacaatcgaggccggccccttcaaggttggcttccag
ccgatttcccactccatccccgaaagcagcgcgctcgtcatcgacacgcctgcggggcgg
gtcgtgcattcgggcgacttcaaggtcgatctgacgccgggcgtcggcgaacctttcgat
cctgccgcttttgaggacatcgccaaggacggcgtcaaggcgctggtgtgcgacagcacg
aatgtcttcagccccgatgcgggccgctctgaggccacgatcggccctgacatcgaagct
ctggtcgcctcggccaagggcatggtcgtggccacgacattcgcctccaacgtggcgcgt
gtgaaaacactggccgaagcgggccagcgggcagggcgctctatcgtgctgttgggccgt
gcgatgaaacgcatggtcgacgcggcacaggaaaccggcgtactggccgacttccccggt
accgtcagccccgaagccgcacgcgacattccgcgcgaaaatctgatgcttctggtcacc
ggcagccagggcgaacgccgggccgcctccgcacagcttgcgcggggcaagtacatgggg
ctggaaatgcaagagggcgacatgttcctcttttcctccaagaccatcccgggcaacgaa
aagggcgtgatccgcatcatgaaccagttctcggaaatgggcgtggatgtggttgacgac
agttcgggcaaatatcacgtgtcgggccacgccaaccgtcccgatcttgaaacgctgcac
gacatcatcaagccgcaggtgctgatcccgatgcacggcgaacaccgccatctgcgcgaa
cacgtgaaaatcgccgacggcaaaggcatcaccggcgtgcttgcggtcaacggcatgatg
gtcgatctgtccggcaacgcgcccaagatcgccgaatacatcgacaccggccgcacctat
ctcgacggctcggtgcaatacggtgcgatggacggtgtcgtgcgcgaccgcatccgcatg
gcgctgaacggtcatctgaccgtgacggtcatcatggacgacgaggatgaaccgctcggt
gatccgtgggtcgacgtgatgggcctgcccgaaacgggcaacagccgcgccgcactggtc
gatgtggtcgaagcggacctgagccagtggttgggtcgtcaaaaagccaaaacgctgcgc
gacgacgaggcgctgaacgacggtctgcgcaaagcggcacggcaatccgcctttggcgag
atcggcaaaaagcccgaagtcaccgtggtggtcagccgtctgagctga
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