Sulfitobacter sp. S190: K3756_07965
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Entry
K3756_07965 CDS
T10858
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
susq Sulfitobacter sp. S190
Pathway
susq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
susq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3756_07965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
susq03019
]
K3756_07965
03009 Ribosome biogenesis [BR:
susq03009
]
K3756_07965
Enzymes [BR:
susq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K3756_07965
Messenger RNA biogenesis [BR:
susq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K3756_07965
Ribosome biogenesis [BR:
susq03009
]
Prokaryotic type
rRNA processing factors
K3756_07965
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UWR23876
LinkDB
All DBs
Position
1552261..1555032
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AA seq
923 aa
AA seq
DB search
MPKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALLEEERAYAEAQAARDAKEDEDPKPKRRSRSR
SRSKSKAEDVATDDATASADIDGMETVDLTDGDDVEVSEDEASSPMERVKEAPVDSPDDS
DDTSDVSSDETDDGDDADAPASKGSDAAAKDDSIESVADDDDQDDIRPARKPRPRRYKIQ
EVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKK
LKEIATEIQVPQGAGLIVRTAGAKRTKAEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEE
GDLIKRSIRDLYNREIDEVFVEGERGYRIAKDFMKMIMPSHAKNVKRYEDQLPLFARYQV
ESYLSGMFNPTVQLPSGGYIVIGVTEALVAVDVNSGRATKEGSIEQTAVKTNLEAADEVA
RQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQR
LRPGMIEATTQPCGACHGTGLIRSDDNLALSILRQIEEEGTRRRSREVLIKAPVGIANFL
MNQKREHIAHIEARYGLSVRIEGEPHLVSPDFSMEKFKTATRVVVQTEAVVSVDTSLMDQ
IDEDEAASDAEEDEAPQAEQSQTHEHGDDGEDRPKRKRRRRRRSRGGRNKDGDQHSEGEN
GSSDAAVSEEGSTADAPAEPSAEAGEEQPAKPKRSRSRTRKPKEAAADADAGADATVADA
PADTPAEEAETAEDAPVEKPKRKRAPRKTKAQKDAEAEAAAAASTADAAETEEAPAKPKR
TRRKKAEPKAEAPVAAAEAPAEEVATVAPEVELPPAPEPEAVATPEPAAPSAPAPEHVVV
EAAPEPEAPKKPKRKGWWSLGSR
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagaaaatgcttatcgatgccacccacgcggaagaaacccgcgtcgtggtggtg
gacggaaacaaggtagaagagttcgactttgaatccgaaaacaaacggcagcttgccgga
aatatctatctcgccaaagtaacacgcgtcgaaccctcgctgcaggcagcgttcgttgat
tatggcggcaaccgccacggttttctcgcgttttccgagatccaccccgattattaccag
atcccggttgccgaccgtgaagcgctgctcgaggaagagcgcgcctacgccgaggcgcag
gcagcacgtgacgccaaggaagacgaggacccgaagcccaaacgccggtcccgttcgcgt
agccgcagcaaatccaaggccgaggatgtcgcgacagacgatgcaacggcatcggcagac
attgacggtatggaaacggtcgatctgaccgatggcgacgatgtcgaagtgtccgaggac
gaggcgtcatcgccgatggagcgtgtcaaagaggcacccgtcgacagcccggacgacagt
gacgataccagtgatgtatcgagcgacgaaacggacgacggcgacgatgcagatgcaccg
gcgtcgaaaggatccgatgcggcggccaaggacgacagtatcgaatcggtcgcggatgac
gacgatcaggacgatatccgccccgcgcgcaaaccccgcccgcgccgctacaagattcag
gaagtgatcaaggtgcgccagatccttctggtgcaggtcgtcaaggaagagcgcggcaac
aagggcgccgctctgaccacgtatctttcgctggcggggcgctactgtgtcctgatgccg
aataccgcacgtggcggtggcatcagccgcaagatcaccaacgccgccgaccgcaagaag
ctcaaggaaatcgcgactgaaattcaggtgccacagggcgccggtctgatcgtgcgcact
gcgggtgcaaagcggaccaaagccgagatcaaacgcgattacgagtacttgcaacggctc
tgggaacagattcgcgagctgacgttgaagtcgatcgctccggcgaagatctacgaggaa
ggcgacctgatcaaacgctcgatccgcgacctttataatcgtgagatcgacgaggtgttc
gtcgagggtgaacgcggttaccgcatcgccaaggacttcatgaagatgatcatgccgtcc
cacgccaagaacgtgaaacgttacgaggaccagctgccgctctttgcccgctatcaggtg
gaaagctatctgtcgggcatgttcaaccccacggtccagctgccatcggggggctacatc
gtgatcggtgtgaccgaggcgcttgtcgcggtcgacgtgaactccggtcgtgcgaccaag
gaaggctcgatcgagcagacggcggtcaagaccaacctcgaggccgcagacgaagtggcc
cgccagttgcgtctgcgcgatctggccggtcttatcgtgatcgacttcatcgatatggac
gaacgcaagaacaacgcggccgtcgagaagcggatgaaggacaagctcaagaccgaccgc
gcgcgtattcaggttggccgcatttcgggctttggcctgatggagatgtcgcgccagcgt
ttgcgtccgggtatgatcgaggcgacaacgcagccctgtggcgcgtgccacggcactggc
ctgatccggtcggacgacaatctggcgctgtcgatcctgcgtcagatcgaggaagagggc
acccgccgccggtcccgcgaggtgctgatcaaagcgcctgtgggcatcgcgaacttcctg
atgaaccagaagcgcgagcacatcgcccatattgaagcacgctatggtttgtccgtgcgc
atcgagggtgagccgcatctggtcagcccggatttctcgatggagaagttcaagacagcc
acacgtgttgtcgtgcagacagaagcggttgtatccgtcgatacatcgctaatggaccag
attgacgaggacgaagcggccagcgacgcggaagaggatgaagcgccgcaagccgagcag
tcccagacgcatgagcatggtgacgacggtgaagatcggcccaagcgtaaacggcgtcgt
cggcgtcgcagccgcggcggtcgcaacaaggacggcgatcagcattcagaaggcgagaac
gggtcatctgatgccgcggtctccgaagagggcagcacagcggatgcaccggcagagccg
agcgctgaagcgggtgaggaacaaccggcgaagcccaagcggagccggtcgcggacgcgc
aagcccaaggaagcggcagcggatgctgatgcaggggccgatgcgacagttgcagatgct
cccgctgacacacccgccgaggaggcagagaccgccgaggatgcgccggtagaaaaaccc
aagcgcaagcgggcaccgcgcaagaccaaagcgcaaaaggacgccgaagcggaagcggca
gcggcagcgtcgactgctgatgcggcagagaccgaggaagcacccgccaagccaaaacgc
acccgccgcaagaaagccgaaccgaaagcggaagcgcccgtcgcggccgctgaagctccg
gcagaggaagtggcgactgttgcgccggaagtcgaattaccaccggcaccggaacccgaa
gccgtagcaacgccagagcccgctgccccttctgcgcccgcgccagagcatgtcgttgta
gaggctgcccctgagcccgaggccccgaaaaagccaaaacgcaagggatggtggtctttg
ggcagtcggtga
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