Sutterella faecalis: FG381_09890
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Entry
FG381_09890 CDS
T06027
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sutk
Sutterella faecalis
Brite
KEGG Orthology (KO) [BR:
sutk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sutk03019
]
FG381_09890 (hrpA)
Enzymes [BR:
sutk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FG381_09890 (hrpA)
Messenger RNA biogenesis [BR:
sutk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FG381_09890 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
HA2_N
AAA_19
nSTAND3
T2SSE
NACHT
Myosin_head
ABC_tran
AAA_23
SRP54
PhoH
Motif
Other DBs
NCBI-ProteinID:
QDA55212
LinkDB
All DBs
Position
2333199..2337647
Genome browser
AA seq
1482 aa
AA seq
DB search
MADNRALFAAFQKVRADVDQALEETRRKEAEKRAAEEAARLEERRRKRAGIPGEKLAAKS
VSQSVEKAPAKPLLKPAPRPVGKPSAASSPKPQPPKEPQRFSTPKGAFGSMLADAAAASG
ARFREAKGRDSAEDRKNPEVREAPKNQNASVVGEPSKAVRANPARRESPAPQRRGSPNEE
KRPAARRPETRPGNGTPAREGLRPQKRKPDGAERKTDGRSRGREKLSFLERRTPIPPFAL
MPGLPVSERAPEIIRAIEENQVIIVCGETGSGKTTQLPKICLMAGRGQTGRIGHTQPRRI
AASSIARRIAEELKTEPGDVVGFKVRFTDHTAPGATIKLMTDGILLAETQGDPLLRAYDT
IIIDEAHERSINIDFLLGYLKRLLPKRPDLKVIVTSATIDAERFAKHFAKDGKDAPVLTI
SGRTYPVEIRYRPIEDPDEDDDQILSAIDDAVTELEIAGRGDILVFLPGEREIRDAADWL
RKSRVGKADILPLYARLSASEQDRVFKPSGGLRRIILATNVAETSVTVPGIRYVVDTGLA
RVKRYSYRSKVEQLLVEPVSQASANQRAGRCGRVADGICIRLYDENDFNRRPAFTDPEIM
RSNLAAVILRAISLHLGDIREFPFVQAPPPKAIADGYAILQELGSLTDAGELTEVGRALA
RLPVDPKLGRMLLAGSEKNALRELLIITSGLSVQDPRERPVDQQQAADEAHRKLADERSD
FLSFVKVWDFVEKARSEKESNRKFDQEMKRRFLSPRRLREWREVEGQLRMLVTDLGWRMN
TAPATYEEVHRSLLTGLLGNIGSKTVESDFRAPPYAGARGIKFWIWPGSVRAKKAGRWVL
AGQIIETTKLYARCVADIDAEWIEAAAGSLIRRAWSEPHWEKRRGEVVAMERGTLYGLTI
YQQRRVSFAPHDPKLARELFIREALVAGELDAKLSFFQHNQRLVREIEELEHKTRRPDVL
VDDELIFSFYDRELPQDVCSLKTLEKWLAEERKKNPKVLELTKDELMRHGAEGVTNEWFP
KSIRMAGIDMTLSYQFEPGSPRDGITMTVPLFALNQLDPVRAEWLVPGMVKEKAQVLLKS
LPQKIRRNCVPLADYAAGFLTRSGGGAPQPRGFLEVLADDVRSETGVPCTPADFKVEQLP
AHLILNFKVIDEHGRQLAMGRNLAQLRAELGAEAQETFRNVAQQDAEVAKDLADQITNWT
FGELPELMEIQRRGETLIGHPALVDEGDACAIEVFDDPLEAQKAHRKGLRKLFRLTLREQ
VKFVERSLRDLGRVQMQASVVPGLAKNFENFDDLENDVVDCVLEATAMADPLPTDEESFQ
ARREDARGRLSLVAGEVSRLLTEVATIAGTIPLKLKRMTQEKSLCEDVTRELEGLFPPHF
LLSAPLSQLMHYPRYLKAVVYRLEHFSDDPARDASRQAQIERLSVPWQRAVAARRGQPDE
HLEEFRWMLEELRVSLFAQQLRTPMPVSVKRLERIWQSISRL
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaaccgtgctctttttgcggcctttcagaaggtgcgcgcagatgtggatcag
gcgctcgaggaaacgcgccgaaaggaagctgaaaagcgtgcggccgaggaggccgcgcgc
cttgaggaacggcgccgtaagcgcgccggcatccccggggagaagctcgccgcgaaatct
gtctcgcagtccgtagagaaggcgcctgcaaagccgcttcttaagcccgccccgagacct
gtcgggaagccttccgcggcgtcttctccaaagcctcagcctccgaaggagccgcagagg
ttttcgacgcctaagggcgccttcggctccatgctcgccgatgcggccgccgcttcgggc
gctcgattccgcgaggcgaaggggcgcgattcggcagaagacaggaagaaccctgaagtc
cgggaggctccgaaaaatcagaacgcttccgtcgtcggggagccttcgaaggcggtgcgt
gcgaatccggcgcgtcgggaaagccccgcgcctcagcgcaggggttcgcccaacgaggag
aagcgcccggccgcaaggcggcccgagacgcgtcccggaaacgggaccccggcgcgcgag
ggcctccgtccgcaaaaaaggaagcctgacggcgcggaacgaaagacggacgggcgctcg
cgcgggagggagaagctcagctttcttgaacgccggacccccattccgccttttgctctc
atgccgggactgccggtttccgagcgggcgccggagatcatccgcgcaattgaagagaat
caggtgatcatcgtctgcggcgaaacgggttcgggcaaaaccacgcagcttccgaaaatc
tgcctcatggccggccgcggtcagacggggcggatcgggcacacgcagccgcgccgcatt
gccgcgagctcgattgcccgccgcattgccgaggaacttaaaacggagccgggcgatgtt
gtgggcttcaaggtgcgcttcacggaccatacggccccgggcgcgacgatcaagctcatg
acggacggcattctccttgccgaaacgcagggggatcccctgcttcgcgcctacgacacc
atcatcatcgacgaagcgcacgagcgatcgatcaatattgattttctcctcggatacctg
aagcgccttctgcccaagcgccccgacctcaaggtgatcgtgacttcggccacgatcgac
gccgagcgctttgcaaagcacttcgcgaaggacgggaaggacgcgccggtcctcacgatt
tccgggcgcacctatccggtggaaatccgctaccggccgatcgaggatccggacgaggac
gacgatcagatcctttcggcaattgacgacgccgtgacggaacttgaaatcgcgggccgg
ggagacattctggtatttcttccgggcgaacgcgaaatccgggatgcggcggactggctc
agaaaatcccgcgtcgggaaggcggacatcctccccctctatgcgcgtctttccgcttcc
gagcaggatcgggtcttcaagccctcggggggcctgaggcgcattattctcgccaccaat
gtggcggaaacgtcggtcacggtgcccgggatccgctatgtcgtcgatacggggctcgcg
cgcgtgaagcgctattcataccgctcaaaggtcgagcagcttctcgtcgagcccgtgagc
caggcttcggccaatcagcgcgcgggccgctgcggccgcgtggccgacggcatctgcatc
cgcctctacgacgaaaacgacttcaaccgccgtccggccttcacggatccggaaatcatg
cgctcgaaccttgccgccgtgatcctgcgcgcgatttcgctccatctcggcgacatccgg
gagttccccttcgtgcaggcgccgccgccgaaggccattgccgacggctacgcgattctg
caggaactcggttcccttacggatgcgggagaacttaccgaagtgggccgcgcgctcgct
cgtcttccggtcgacccgaagctcggacgcatgctgcttgctggttcggaaaagaatgcg
ctcagagagctcctcatcattacgtcgggactttccgtgcaggatccgcgcgaacgcccg
gtcgatcagcagcaggcggccgacgaggcgcacagaaagctcgccgacgagcgctccgac
tttctttccttcgtcaaggtctgggactttgtcgaaaaagcgcggtccgaaaaggaaagc
aaccgcaagttcgatcaggaaatgaagcggcgcttcctgtcgccgaggcgccttcgcgag
tggcgcgaggtcgaggggcagctgagaatgctcgtcaccgatctcggctggcgcatgaat
acggcgcccgccacgtacgaggaagtgcatcgctcgcttctgaccggtcttctcggcaac
atcgggtccaaaaccgtggaaagcgacttccgggcgcctccctatgcgggggcccggggg
atcaagttctggatctggccggggtcggtgcgcgccaagaaggcgggacgctgggtgctc
gcggggcagatcattgaaaccacaaagctctatgcgcgctgcgtcgcggatattgatgcc
gaatggattgaagccgctgcgggcagcctcatccgccgcgcctggagcgaaccgcattgg
gaaaagcgccgcggcgaagtggtggcgatggaacgcggaacgctctacggcctcacgatt
tatcagcaaagacgcgtttcctttgcgccccatgatccgaagctcgcacgagaactcttc
atccgcgaggcgctcgtggcgggcgaacttgacgcgaagctctccttctttcagcacaat
cagcggctcgtgcgcgagattgaggagctcgagcacaaaacccggcgtccggacgtgctc
gttgacgacgaattgatcttcagcttctacgaccgggagcttcctcaggatgtgtgttcc
ctgaagacgctcgagaagtggcttgcggaggaaagaaaaaagaacccgaaggtgctcgag
ctcacgaaggatgaactcatgcgtcatggcgccgaaggcgtcacgaacgaatggttcccg
aagtcgatccgcatggcagggatcgacatgacgctttcctaccagtttgaacccggcagt
ccccgggacggcatcacgatgacggtgcccctctttgcgctcaatcagctcgatcccgtg
cgtgcggaatggctggtgcccggcatggtgaaggaaaaagcgcaggtgctgctcaaaagc
cttccgcagaagatccgccgcaactgcgtgccgctcgcggactatgccgcgggattcctc
acgcgatcggggggcggcgctccgcagcctcgcggcttcctcgaggttctcgccgacgac
gtgcgttccgaaacgggcgttccctgtacgcccgccgacttcaaggtcgagcagctcccc
gcccatctgatcctcaatttcaaggtcatcgatgagcacggccggcagctcgccatgggc
cgcaacctcgcgcagcttcgtgctgaactcggtgctgaagcgcaggaaaccttcagaaac
gtcgcgcagcaggatgcagaggtcgccaaggacctcgcggatcagatcaccaactggact
ttcggcgaactgccggaactgatggagatccagcgcaggggcgaaacgcttatcggtcat
cctgcgctcgtcgacgaaggcgacgcctgcgcgatcgaagtcttcgacgatccgctcgaa
gcccagaaagcgcaccggaagggattgagaaagctcttccgcctcacgcttcgcgaacag
gtgaagtttgtcgaaaggagtctgagagatctcgggcgcgtgcagatgcaggcctcagtg
gttccgggacttgcgaaaaacttcgagaatttcgacgacctcgaaaacgacgtggtcgac
tgcgtgcttgaagcgaccgccatggcggatccgctgcccactgacgaagagtccttccag
gcgcggcgcgaggatgcccgcggacggctttctctcgttgcgggcgaggtctcgaggctc
ctcacggaggtcgcaaccattgcggggacgattccgctgaagctgaagcgcatgacgcag
gaaaagtcgctttgcgaggatgtgacgcgcgagctcgaggggctctttccgccgcacttt
ctcctctcggcgccgctcagccagctcatgcactatccgcgatacctgaaggcggtcgtc
taccggctcgagcacttcagcgacgatccggcaagagacgcttcccgtcaggctcagatc
gagcggctctccgtgccctggcagcgggccgtggccgcccgccgcggtcagcccgacgag
cacctcgaggaattccggtggatgctcgaggagcttcgcgtctcgctcttcgcgcagcag
ctgaggacgccgatgcccgtgagcgtgaagcgcctcgagcgcatctggcagtcgatttca
agactttga
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integrated database retrieval system
