Suttonella sp. R2A3: L0B52_05260
Help
Entry
L0B52_05260 CDS
T07824
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sutr
Suttonella sp. R2A3
Pathway
sutr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sutr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L0B52_05260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sutr03021
]
L0B52_05260 (rpoC)
03400 DNA repair and recombination proteins [BR:
sutr03400
]
L0B52_05260 (rpoC)
Enzymes [BR:
sutr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L0B52_05260 (rpoC)
Transcription machinery [BR:
sutr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L0B52_05260 (rpoC)
DNA repair and recombination proteins [BR:
sutr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L0B52_05260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
DUF2790
LepA_C
Motif
Other DBs
NCBI-ProteinID:
UJF23761
LinkDB
All DBs
Position
complement(1120255..1124457)
Genome browser
AA seq
1400 aa
AA seq
DB search
MMKDLVSFFKPQDDADDFDRIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCA
KIFGPMKDYECLCGKYKRLKHRGVVCEKCGVEVTKSSVRRERMGHIDLATPVAHIWFLKS
LPSRIGLLLDLTLREIERVLYFESFIVLDPGMTPLEKNQLLTEEAYIQALEEYGHEFKAM
MGAEAIQYILKNMELETEIADLREALAETNSETKSKRIVKRLKLMEALHASGNKPEWLIL
EVLPVLPPDLRPLVPLDSGRFATSDLNDLYRRVINRNNRLKRLLELFAPDIIVRNEKRML
QEAVDSLLDNGRRGRTVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP
TLRLHQCGLPKRMALELFKPFIFQQLIEKDQAPTIKAAKLMVERDEPEVWDALEYVIREH
PVMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARALMMSSNNILSPANGEPIIVPSQDVVLGLYYMTRERINAKGEGMRFADIDEVERAYQA
GHVALQAKIQVRLQFFDAEEPYVKRVETTVGRALLSQILPKGLPYALIDKPMVKKAISAL
INACYRQVGLKETVILADQLMYTGFRYATRSGTSIGVTDMVVPNEKAGILQKAEDEVKDI
EHQYNSGLLTQGEKYNKVIDIWSGTNDKVAKAMMSQLGKIEVTNKDGETVEQPSFNSVFM
MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA
DTALKTANSGYLTRRLVDVAQDVVVNEQDCGTRAGLEIQAVVEGGDVVEKLSDRVLGRVL
AEPVMDHNSGEVALEADTLLGEQEIEVLENAGVDRVVVRSVITCESRKGVCAQCYGRDLA
RGHKANVGESVGVIAAQSIGEPGTQLTMRTFHIGGAAQSSASIGSIEVKTNGTARLTNIK
TVINKDGKLVAISRSGELSIIDKNGHERERYKISYGATLNINDGDSVTQGQTLATWDPHT
HPIVAEVEGFATFSDFEDGVTVQSSTDPETGLTVQTVMDNTQRSSAAKDKRPMIHFVDKK
GKLVTQAGSDVPVTYFLPAGAIININDGAEIRVGDVLARMPQESGKTGDITGGLPRVADL
FEARKPKEPAILAEITGVVSFGKETKGKQRLVITGEDGESFEILIPKWRRLNVFEGEQVK
QGELLADGEPTPHDILRLRGVHELAAHIVKEVQNVYRLQGVKINDKHIEVIVRQMLRKVL
VSDAGESTLIKGEQLDIQRVLEVNDQLQASGKLPVRYEPVLMGITKASLATESFVSAASF
QETTRVLTEAAVHGSIDDLHGLKENVIVGRLIPSGTGLAYHQERRSLRQEEQNLLTMGVA
SAEDGEADDVEVSSSTEDDA
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaagatttggttagcttttttaaaccgcaagacgacgctgatgattttgaccgt
atccgcatcggtttagcctcaccagatatgatccgttcgtggtcatatggtgaagtgaag
aagccggaaacgatcaattaccgcacgttcaaaccagaacgcgacggtttgttctgcgcg
aaaatttttggcccgatgaaagactacgagtgtttgtgtggtaaatacaagcgcttgaag
catcgtggtgtggtgtgtgagaaatgtggcgttgaagtcacaaaatcgagcgtacgtcgt
gagcgtatgggtcatatcgacttagctactccggttgcacacatttggttcttaaaatca
ttgccatcacgcattggtttgttgctcgatttgaccttacgtgaaatcgaacgtgtgctt
tatttcgagtcgtttatcgtgctcgatccgggtatgacgccattagagaaaaatcagtta
ctcactgaagaggcttacattcaggcgctcgaagagtacggtcacgaatttaaagcgatg
atgggcgccgaagcgatccaatatattctcaagaatatggagttggaaaccgaaatcgct
gatttgcgtgaagcgctcgcggaaaccaattcagaaaccaagagcaagcgtattgttaag
cgcttgaagttgatggaagcgttgcacgcttccggcaataagccagaatggctgatttta
gaagtcctgccagtattgccaccggatctgcgtccgttggtgccgttggattctggacgt
tttgcaacttcagatttgaacgatctgtatcgtcgagtcatcaaccgtaacaaccgtttg
aagcgtttgttggagctgtttgcgccggatatcatcgtgcgcaatgaaaaacgcatgctg
caagaagccgtagattcattgctcgataatggtcgtcgtggccgtactgtgaccggctcg
aacaagcgtccgttgaaatctttggcggatatgatcaaaggtaagcaagggcgtttccgt
caaaacttgctcggtaaacgggtggattattctggccgttcggtgattgtggttggtcct
actctgcgtttgcaccaatgtggtctgccaaaacgcatggcattggagctctttaagccg
tttatcttccagcagttgatcgaaaaagatcaggcgccaacaatcaaagcagcgaagctg
atggttgaacgtgatgagccggaagtctgggatgcgttggaatatgtgatccgtgagcac
ccagtgatgctcaaccgtgcaccaaccttgcaccgtttgggtatccaggcatttgaaccg
attttgatcgaaggtaaagcgatccagttgcatccattagtgtgtgcggcgtttaacgct
gacttcgatggtgaccagatggcggtacacgtaccactctcactcgaagcgcagctcgaa
gcgcgcgcattgatgatgagttcgaacaacatcttgtcccctgcgaacggtgagccaatt
atcgtgccatcacaagacgtggtgcttggtttgtattacatgactcgagagcgtatcaat
gctaaaggcgaaggcatgcgctttgccgatattgatgaagttgagcgcgcttaccaagcg
ggtcatgttgctttgcaggccaaaatacaagtgcgtttgcagttcttcgacgctgaagag
ccgtatgtgaagcgtgtagaaaccacggttggtcgtgcgcttctctcacaaattctgccg
aaaggtttgccgtatgcgctcatcgataagccaatggtgaaaaaagccatttctgcgctg
attaacgcctgttatcgtcaagtcggcttgaaagaaacggttatcttggctgaccagttg
atgtataccggtttccgttacgccacccgttcaggtacctcaatcggggtgaccgatatg
gtggtgccaaatgaaaaagcgggtattttgcagaaagccgaagacgaagttaaagacatc
gagcaccagtataattctggtttgctgacccagggtgagaaatacaacaaggtaatcgat
atctggtcaggcaccaacgacaaagtcgcgaaagcgatgatgagtcaattgggcaagatc
gaagtcaccaataaagacggcgagacagttgagcagccttcgtttaactcggtgtttatg
atggctgattctggggcgcgtggtagcgcggcgcagattcgtcagctcgctgggatgcgt
ggtttgatggctaagccggatggttcaatcatcgaaacgccgatcactgcgaacttccgt
gaaggtttgaacgttctgcagtactttatttctacccacggtgcgcgtaaaggtttggcc
gataccgcgttgaaaaccgcaaactcagggtatttgacccgtcgtttggtcgatgtcgcg
caagatgtggtggttaacgaacaagattgtggtactcgcgctggtttggaaatccaggcg
gttgttgaaggcggcgacgtggtcgagaagctttcggaccgtgtgttgggccgtgtgtta
gccgagccggtgatggatcacaacagcggtgaagtcgcgcttgaggctgatacgctgctc
ggcgaacaagaaattgaagtgttggaaaatgccggtgttgaccgtgttgtggtacgcagc
gtcattacgtgtgaatcgcgcaagggtgtgtgtgcacagtgttacggacgtgacttggcc
cgaggccataaagcgaacgttggtgagtcggttggggttatcgccgcgcaatcgatcggt
gagccaggtactcagttgacgatgcgtacgttccacatcggtggggcagcacaaagctcg
gcttcgattggtagtatcgaggtgaagactaacggtacagcgcgtttgacgaacatcaaa
accgtgattaataaagacggtaagctggttgcgatctcacgtagtggtgaattgtcgatt
atcgataaaaatggtcacgagcgtgagcgttataagatctcctatggggcaacgttaaac
atcaatgatggtgatagcgtcactcaagggcagacgttagcgacttgggatccgcatact
catccgatcgtggctgaggttgaaggttttgccacgttttctgatttcgaagatggcgtg
actgtacaaagctcaaccgatccggaaacgggcttgaccgtacaaacggtcatggataat
acgcagcgctcaagtgcggcaaaagacaagcgcccgatgatccattttgtcgataaaaaa
ggcaaactggtcactcaggcgggttcggatgtaccggtaacctacttcttgccagcaggc
gcgatcatcaatattaatgatggtgcagaaattcgtgtgggtgacgtattagcacgtatg
ccacaagaatcgggcaaaaccggcgatatcaccggtggtttgccacgtgtggctgatctc
tttgaggcgcgtaagccgaaagagccagcgattttggcagaaattaccggggtggtgtcg
tttggtaaagaaaccaaaggcaaacaacgtttggtgattactggtgaagacggtgagtcg
tttgagattttgattccgaaatggcgtcgtttgaatgtctttgagggtgagcaggtcaaa
caaggcgagctgctcgctgatggtgaaccaacacctcatgacatcctgcgtttgcgcggt
gtacacgagttggcggcccatatcgtcaaagaagtacaaaacgtttatcgcctgcaaggg
gttaagatcaacgacaagcatatcgaagtcatcgtgcgccaaatgctgcgtaaagtatta
gttagcgatgcaggcgaatcaaccttgattaagggtgagcagcttgatatccagcgtgtg
ctcgaagtcaatgatcagttgcaagccagcggtaaattaccggtgcgttatgaacctgta
ttgatggggattactaaggcgtcgttggcaaccgagtcgtttgtttctgctgcatcattc
caggaaaccacgcgtgtactcaccgaagcagccgttcatggcagcatcgatgacctgcat
ggtttgaaagagaacgtgattgttgggcgtttgatcccatcaggtacggggcttgcttat
catcaagagcgtcgaagcttgcgccaggaagagcagaatttgctcaccatgggtgtagca
agcgctgaggatggcgaagcggatgacgttgaggtgagttcttcgacagaagacgacgct
tga
DBGET
integrated database retrieval system
