Sulfurifustis variabilis: SVA_1059
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Entry
SVA_1059 CDS
T05321
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sva
Sulfurifustis variabilis
Pathway
sva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVA_1059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sva03019
]
SVA_1059
Enzymes [BR:
sva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SVA_1059
Messenger RNA biogenesis [BR:
sva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SVA_1059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Shikimate_DH
AAA_22
ERCC3_RAD25_C
P-loop_SecA
Flavi_DEAD
adh_short
Motif
Other DBs
NCBI-ProteinID:
BAU47638
UniProt:
A0A1B4V293
LinkDB
All DBs
Position
complement(1066027..1067391)
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AA seq
454 aa
AA seq
DB search
MTFSSLGLSAELLRAVADQGYDRPTPIQAQAIPAILAGRDLMASAQTGTGKTAAFTLPLL
HRLTAGGVARGRVRALVLVPTRELAAQVAEAVRTYGRHLPLRCAQVYGGVKIGPQFRELR
AGVDVLVATPGRLIDHLERGSVNLSGVEVLVLDEADRMLDMGFLPAIERIAKQLPKARQT
LLFSATFSDPIRKLAQRFQNEPQRIEVARRNAAADDVSQSAYLVDQGRKRELLAHLFEAQ
SWQQVLVFTRTKAGADRLAKQLGKEGIEATAIHGDKSQHQRMRALSDFKRMKVRALVATD
VAARGIDIDELPHVVNFDLPNNPEDYVHRIGRTGRAGQKGAAISLVSGEERSMFAAIKRL
VKLDIAAATVEGFEPQHRASTSGDSRPQARRRNGAPRSHSAHGGHRHGAGRGEHRDPTGR
QDRGHGHARPKAHEAHRRPGKSAPRPSRQQATLG
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgacgttttcatcgctcggcctgtcggccgaactcctgcgcgccgtggccgaccagggc
tacgaccgacccacgccgattcaggcccaggcgataccggcgatcctcgccgggcgcgat
ctgatggcgagcgcccagaccggcaccggcaagaccgcggccttcaccctgccgctgctg
caccgcctgaccgccggcggcgtcgccaggggacgcgtgcgcgcgctcgtcctcgtaccg
acgcgcgagctcgccgcccaggtggccgaggccgtgcgcacgtatggccgccatctcccg
ctgcgctgcgcgcaggtctacggcggcgtgaagatcgggccgcagttccgcgagctgcgc
gccggcgtggacgtgctcgtcgcgacgccggggcggctgatcgaccacctcgaacgcggc
agcgtgaatctctccggcgtcgaggtgctggtgctcgacgaggccgaccgcatgctcgac
atgggcttcctgcccgcgatcgagcgcatcgcgaagcagctcccgaaggcgcgccagacc
ctgctgttctcggccacgttctccgatcccatccgcaagctcgcgcagcgcttccagaac
gagccgcagcggatcgaggtcgcgcgccgcaacgccgcggccgacgacgtgagccagtcg
gcctacctcgtcgaccaggggcgcaagcgcgagctgctcgcgcacctcttcgaagcgcag
tcgtggcagcaggtgctcgtcttcacccgcaccaaggcgggcgccgaccgtctcgcgaag
cagctcggcaaggaaggcatcgaggccaccgccatccacggcgacaagagccagcatcag
cgcatgcgcgcgctctccgatttcaagcgcatgaaggtgcgcgcgctggtcgcgaccgac
gtcgcggcccgcggcatcgacatcgacgagctgccgcacgtggtgaacttcgacctgccg
aacaacccggaagactacgtgcaccgcatcggacgcaccggccgcgccgggcagaaaggc
gcggcgatctcgctcgtttcgggcgaggagcgttcgatgttcgcggccatcaagcggctc
gtgaagctcgacatcgcggcggccacggtcgagggtttcgagccgcagcaccgtgcctcg
acctcgggcgactccaggccgcaggcgcgtcggcggaacggcgcaccgcgttcgcattcc
gcccacggcggccatcgccacggcgcgggccgcggcgagcatcgcgacccgaccggccgc
caggaccgcggccatggccacgccaggccgaaggcccacgaggcgcatcgccgtccgggc
aagagcgcgccccgcccgtcccgtcagcaggccaccctcggctga
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