Sulfurifustis variabilis: SVA_2393
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Entry
SVA_2393 CDS
T05321
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sva
Sulfurifustis variabilis
Pathway
sva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVA_2393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sva03019
]
SVA_2393
03016 Transfer RNA biogenesis [BR:
sva03016
]
SVA_2393
Enzymes [BR:
sva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SVA_2393
Messenger RNA biogenesis [BR:
sva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SVA_2393
Transfer RNA biogenesis [BR:
sva03016
]
Prokaryotic type
tRNA degradation factors
SVA_2393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_2
CRS1_YhbY
Motif
Other DBs
NCBI-ProteinID:
BAU48943
UniProt:
A0A1B4V5W4
LinkDB
All DBs
Position
complement(2453941..2456043)
Genome browser
AA seq
700 aa
AA seq
DB search
MSKVTKTFQYGTHAVRLETGEIARQASGAVVAAMGDTVVLATVVAQRDAVPGKDFFPLTV
DYQEKTYAAGRIPGGFFKREGRPSEKEILTSRLIDRPIRPLFPEGFHNEVQVVVTVMSVD
PDIDPDVVSMIGVSAALMLSGVPFNGPIGAARVGYANGQYLLNPGNQALATSQLDLVVAG
TEKAVLMVESEAKELPEDVMLGAVTYGHEQMQTAIRAIRELAGEAGAKPWGWQPPAEDTG
LRDALKGAFSQAITDAYQIAEKTARQDRMSEIRAEAVAQFAPEGSAEGTKDAVLKLVGDL
EYRIVRDRILGGHPRIDGRDTRTVRPIVIRTGVLPRTHGSALFTRGETQALVTTTLGTGR
DAQIIDALEGERKEPFMLHYNFPPYSVGEVGRIGSPKRREIGHGRLAKRGVYPVLPDMST
YPYVIRVVSEITESNGSSSMASVCGASLSLMDAGVPIKAPVAGVAMGLIKEGNRFAVLTD
IIGDEDHLGDMDFKVAGTTGGVTALQMDIKIEGINRDIMDAALKQAKEGRMHILGIMSQA
IAAPRSELSEYAPRIISFKINPERIRDVIGKGGSTIRALCEETGTTIDIEDDGTVKVASA
DRAASEEARRRIQQLTADVEVGMIYEGKVAKLMDFGAFVTILPGKDGLVHISQISHERVE
SVSDKLREGEVVKVKVLEVDKQGRIRLSMKAVEEIKSTAS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgaaagtcacgaagacgtttcagtacggaacccacgccgtcaggctcgagaccggc
gagatcgcacgccaggccagcggtgccgtcgtggcggccatgggcgacaccgtcgtgctg
gcgacggtggtcgcgcagcgcgacgcggtccccgggaaggatttctttccgctgacagtc
gattaccaggaaaagacctacgcggcgggacgcattcccggcggcttcttcaagcgcgaa
ggccggccctccgagaaggaaatcctcacctctcgcctgatcgaccgccccatccgcccg
ctgttccccgaaggtttccataacgaagtgcaggtcgtggtgaccgtgatgtcggtcgac
ccggacatcgaccccgacgtcgtctcgatgatcggtgtctcggcggcgctcatgctctcc
ggcgtgccgttcaacggtccgatcggcgctgcgcgcgtcggctatgcgaacggacagtac
ctgctcaatccgggcaaccaggcgctcgccacgtcgcagctcgatctcgtggtcgcgggc
accgaaaaggccgtcctgatggtcgagtccgaggcgaaggaactgcccgaggacgtgatg
ctcggcgcggtgacgtacggacacgagcagatgcagacggcgatccgcgcgatccgcgag
ctcgccggggaagcgggagcgaaaccgtggggctggcagccgccggccgaggacaccggg
ctcagggacgcgctcaaaggtgcgttcagccaggcgatcacggatgcctaccagatcgcc
gagaagaccgcgcgccaggaccgcatgagcgagatccgcgccgaggcggtcgcccagttc
gctcccgagggttccgcggaaggcacgaaggacgcggtgctcaagctcgtcggcgatctc
gagtaccggatcgtgcgcgatcggatcctcgggggtcacccgcgcatcgacggtcgcgac
acgcgcaccgtgcggccgatcgtgatccgcaccggagtgctgccccgcacgcacggcagc
gcgctcttcacgcgcggcgagactcaggcgctcgtcacgaccacgctcgggacgggccgc
gacgcgcagatcatcgatgcgctcgagggcgagcgcaaagagcctttcatgctgcactac
aacttccccccgtactcggtcggggaggtcggccgcatcggcagcccgaaacgacgcgag
atcggtcacgggcgtctggccaagcgcggcgtgtatccggtgctccccgacatgagcacc
tatccctatgtcatccgcgtggtttcggaaatcaccgagtcgaacggctcgagctccatg
gcatcggtctgcggagcgagcctgtcgctgatggatgcgggcgtgccgatcaaggcgccg
gtggcgggcgtcgcgatggggctgatcaaggaaggcaaccgcttcgcggtgcttaccgat
atcatcggcgacgaggaccatctcggcgacatggacttcaaggtggcgggcacgaccggc
ggcgtcaccgcgctgcagatggacatcaagatcgagggcatcaaccgcgacatcatggac
gcggcgctcaagcaagcgaaagaaggccgtatgcacatcctcggcatcatgagccaggcg
atcgccgcgccgcgctcggagctttccgagtacgccccgcgcatcatcagcttcaagatc
aatcccgagcgcattcgcgacgtcatcggcaagggcggatccaccatccgcgcgctgtgc
gaggaaacgggcacgacgatcgacatcgaggacgacggcacggtcaaggtcgcttcggcc
gatcgggcggcgagcgaggaggcgcgccgtcggatccagcagctgaccgccgacgtcgag
gtcggcatgatctacgaaggcaaggtcgcgaagctgatggacttcggcgccttcgtcacc
atcctccccggaaaggacgggctcgtgcacatctcgcagatctcccacgagcgggtcgag
agcgtctccgacaagctccgcgagggcgaggtggtgaaggtcaaggtgctcgaagtcgac
aagcaggggcgtatccgcctgagcatgaaggcggtcgaagagatcaaaagcaccgcctcg
tag
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integrated database retrieval system
