Sulfurifustis variabilis: SVA_3844
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Entry
SVA_3844 CDS
T05321
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sva
Sulfurifustis variabilis
Pathway
sva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVA_3844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sva03019
]
SVA_3844
Enzymes [BR:
sva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SVA_3844
Messenger RNA biogenesis [BR:
sva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SVA_3844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAU50378
UniProt:
A0A1C7AG06
LinkDB
All DBs
Position
complement(3882242..3883678)
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AA seq
478 aa
AA seq
DB search
MSEHHLTDQTFSRLNLPEPLMQGVRQAGFEYCTPIQAQTLPLALAGQDVAGQAQTGTGKT
AAFLLALFNRLLTMPAAPERTGTQPRAIVLAPTRELAVQIHKDAEALGAQAGLKLCLVFG
GTGYEQQRQDLQAGVDVLIGTPGRIIDYFKQHVFDLRAIQVMVLDEADRMFDLGFIKDIR
FLLRRMPDPDKRLNMLFSATLSYRVTELAYEHMNNPQFIRIEPDKRTADKVEQVLYHTAL
EEKIPLLVGLLRHMDPTRSLVFVNTKDMADRLVGWLKANGFLAEVLSGDVPQNMRLRLLQ
DFMEGRLPIMVATDVAARGLHIPDVSHVFNFDLPQNAEDYVHRIGRTARAGKSGDAVSFA
CERYVFALPDIEAYIGHKLPVGKITPELLPTLSPPARGERREREERRGPRRDRTERGARE
RGGRRERPPRDRAPAAAPFAKVEPREPARQPEPDIPPAAERPRRRALARRGFETPAVG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacatcaccttaccgaccagaccttctcccgcctcaatctgcccgagccgctg
atgcagggggtgcgtcaggcggggttcgaatactgtaccccgatccaggcccagaccctc
ccgctcgccctcgcgggccaggacgtcgccgggcaggcgcagacggggaccggaaagacc
gcggcgttcctgctcgcgctgttcaaccgtctgctcacgatgccggcagcgccggagcgc
acggggacgcagccgcgtgcgatcgtgctcgcgcccacgcgcgagctcgccgtgcagatc
cacaaggacgcggaggcgctcggcgcgcaggcggggctcaagctctgcctcgtattcggg
ggcacgggctacgaacagcagcggcaggacctccaggccggcgtggacgtgctgatcggg
acgcctggacgcatcatcgactatttcaagcagcatgtgttcgacctgcgggcgatccag
gtcatggtgctcgacgaggccgaccgcatgttcgatctcggcttcatcaaggacatccgc
tttctgctgcgccggatgccggatcccgacaagcgcctcaacatgctgttctcggcgacg
ctttcctaccgcgtgacggagctcgcctacgagcacatgaacaacccgcagttcatccgc
atcgagccggacaagcgcaccgccgacaaggtcgagcaggtcctgtatcacacggcgctc
gaggagaagatcccgctcctcgtcggactgctgcggcacatggacccgacgcgcagcctg
gtgttcgtcaacacgaaggacatggcggaccgcctggtcggctggttgaaggcgaacggt
ttcctggccgaggtactctcgggcgacgttccccagaatatgcgcctgcgactgctgcag
gacttcatggagggtcggctgccgatcatggtggcgaccgacgtcgcggcgcgaggcctg
cacatccccgacgtctcccacgtcttcaacttcgacctcccgcaaaacgccgaagactac
gtgcatcgcatcggtcgcacggcgcgcgccgggaagagcggcgacgcggtgagcttcgcg
tgcgaacgctacgtgtttgcgctccccgacatcgaggcgtatatcgggcacaagctgccg
gtcggcaagatcacgcccgagctgctgccgaccctgtcgccgcccgcgcgcggcgagcgg
cgcgagcgcgaggagcggcgcggtcctcggcgcgatcggaccgagcgcggggcgcgtgaa
cgcggcggacggcgggaacggccgccccgcgatcgggcgcccgcagcggcgccgttcgcg
aaagtggagcccagggagcccgccaggcagcccgagccggacatcccgccggcggcggag
cggccacgtcggcgcgcccttgcccgacgcggattcgagacacccgcggtcgggtaa
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