Streptococcus vestibularis: NCTC12167_01147
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Entry
NCTC12167_01147 CDS
T07051
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
svb
Streptococcus vestibularis
Pathway
svb03410
Base excision repair
svb03430
Mismatch repair
svb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NCTC12167_01147 (recJ)
03430 Mismatch repair
NCTC12167_01147 (recJ)
03440 Homologous recombination
NCTC12167_01147 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svb03400
]
NCTC12167_01147 (recJ)
DNA repair and recombination proteins [BR:
svb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NCTC12167_01147 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NCTC12167_01147 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC12167_01147 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
tRNA_anti_2
Ig_ZP2
Motif
Other DBs
NCBI-ProteinID:
VED88347
LinkDB
All DBs
Position
1:complement(1124763..1126997)
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AA seq
744 aa
AA seq
DB search
MTGRKYKNMITSTYDWKINTKEPDAGFFKLAKKHGLAETAAKIAYERGIGTEEALEDFLK
ADLSHLHAPYLLHDMDKAVARIRQAIENYEQILVYGDYDADGMTSASIVKEALEMMGAEA
RVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQEQGVDVIVTDHH
SMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADM
VSLTDENRIMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLD
DPNPAIELLTGFDDEEAQAIALEINAKNEERKEVVQKIFDEAMTMVDLDKPVQVLAKEGW
HPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINVFHALDDHRDIFTAFGGHA
GAAGMTLPEENLGQLSEILCHYVYDNDIDTTAKNTLNLDEELQLSELSLDTIKSLEKLAP
FGMDNKKPVFWLHDISVIQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGHLLQEFQQAQG
LELAVTLSVNVWNGQTTLQLMLEDARVDGVQLFDFRSKNMILPEGLPTVEEASNETAAVV
LNTLPDSATELKAWFDGKEFQAIYFKNCIKEAYYLTGYGTREQFARLYKTIYQFPEFDVR
YKLDDLSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEESKIFQDLKRL
VKFQELMALGTPQEIYDWLYKQEQ
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgacagggagaaaatataaaaacatgattacatcaacgtatgattggaaaataaacaca
aaagagccagatgctggcttttttaaacttgctaaaaaacatggactggcagaaacagca
gccaagattgcttatgaacgtggcattgggacagaagaggcacttgaagactttctaaag
gcagatttatcgcaccttcatgccccttatcttcttcatgatatggataaagcagtggct
agaattcgtcaggctattgaaaattatgagcaaatcttagtatatggagattacgatgcg
gatggtatgacgtcagcctcgattgttaaagaagctcttgaaatgatgggcgctgaggct
cgagtttatttgcctaaccgttttacagatggttatgggccgaacgaaagtgtctacaag
tatttcattgagcaagaaggcatttcactcattgttacagtggataatggggttgcggga
aatgaagctattgcttatgcgcaagagcaaggtgtggacgttatcgttacagaccatcac
agtatgccggcacagcttccagatgcctatgccattgtccatccagagcatccagatgcc
gattatccttttaagtatttggcaggttgtggtgtagctttcaaattggcaactgccctc
cttgaaactattcctacagagatgttggatttggtagccattggtaccattgctgatatg
gttagcctaacggatgagaatcgtattatggtcaaggtcggcctggaaattctcaagact
actgagcgtattgggcttcaagaattgcttcgcatttcagatgtggacccaacaacgatt
tccgaagaaacggtaggtttcaaactggctcctcaactcaatgccttgggacgcttagat
gatccaaatccagccattgaactactgaccggatttgacgatgaggaagctcaagccatt
gctctggaaatcaatgctaaaaatgaagaacgtaaggaagttgttcaaaaaatatttgat
gaagccatgactatggtagacttggacaaaccagttcaggttttggccaaggaaggttgg
catcctggcgttctaggtattgtagcggggcgcatcatggagcaaatcagccagacagta
gtggttttgaatattgaagatggtttagctaagggatcagcccgtagtttggaatctatt
aatgtcttccatgcccttgatgatcaccgagacatctttactgcttttggaggacatgct
ggggcggctgggatgacccttcctgaagaaaatcttggtcaactatcagagatcttgtgt
cattatgtctacgataatgacattgatacgactgccaaaaatacgcttaatttagacgag
gagctccaactcagtgagcttagcttggatactattaagagccttgaaaaattagcacct
tttggtatggataataaaaagccagtcttttggctacatgatatttccgttattcaagct
agaactatggggcaaaatggagctcatcttaagtttaaggttaagcaaggcaaggatagt
tttgatgttgttgcctttaataaaggccacttgcttcaagaatttcaacaagctcaaggt
ttggaattggcagtgaccttatctgttaatgtttggaatggtcaaacaacgctacagctc
atgctagaagatgcgcgcgtggacggtgttcagttatttgattttcgctcaaaaaatatg
atattacctgaaggcctaccaacggtagaagaggcctcaaacgaaacagcagcagttgtc
ctcaataccctaccggattcagcgacggaattaaaagcgtggtttgatggtaaggaattc
caggctatttattttaagaattgcattaaggaagcctattatctgacgggctatggaact
agagaacaatttgcaaggctctataaaaccatttatcaatttccagaatttgatgtgcgc
tataaactagatgacctcagtcattaccttaagattgataaaattctcctcatcaagatg
attcaaatctttgatgaattggactttgtcactattgataatggcgtcatgacagttaat
aaagaggctgaaaaacgtgagattgaggaaagcaagattttccaggaccttaaacgtctt
gtcaagttccaagaactcatggctttgggaacaccacaggaaatttatgattggctctac
aaacaggagcagtag
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integrated database retrieval system
