Streptococcus vestibularis: NCTC12167_01814
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Entry
NCTC12167_01814 CDS
T07051
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
svb
Streptococcus vestibularis
Pathway
svb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
svb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC12167_01814 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svb03021
]
NCTC12167_01814 (rpoC)
03400 DNA repair and recombination proteins [BR:
svb03400
]
NCTC12167_01814 (rpoC)
Enzymes [BR:
svb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC12167_01814 (rpoC)
Transcription machinery [BR:
svb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC12167_01814 (rpoC)
DNA repair and recombination proteins [BR:
svb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC12167_01814 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Dehydratase_LU
Motif
Other DBs
NCBI-ProteinID:
VED89670
LinkDB
All DBs
Position
1:complement(1813384..1817022)
Genome browser
AA seq
1212 aa
AA seq
DB search
MVDVNRFKSMQITLASPTKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKETPLEPKSLLTEREYREKLQEYGHGSFVAKMGAEAIQDLL
KQVDLEVEIAELKEELKTATGQKRVKAVRRLDVLDAFYKSGNKPEWMVLNILPVLPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELSAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
LMAIELFKPFVMREIVAREYAGNVKAAKRMVERGDERIWDILEDVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLLLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMVFKDIDEAVMAYRNGYVHLHSRVGI
AVDSMPDKPWKENQLHKIFVTTVGKILFNSIIPAEIPYLQETTNENLTDSTPDKYFLEPG
QDIQTVIDSLEINAPFKKKNLGNIIAETFKRLRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKQEIIDAAHHRVEEINKAFRRGLMTEDDRYVAVTTTWREAKEALEKRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRAITDGKEVTETL
EERLQGRYTKKSVKNPTTGEVIVGPDTLITEDMAAAIVNAGVEEVTIRSVFTCNTRHGVC
RHCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGTVIEIEEDAATRTKKVFVQGKTGMGEYVVPFTARMKVEVGDE
VHRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VCVMDPGDTDLLPGTLMDISDFTDANKDIVISGGVPATSRPVLLGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKTIPAGTGMARYRNIEPLSVNEVEVIENI
AVDEAIVETSED
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgatttaaaagtatgcaaatcacactagcttcaccaaccaaggtc
cgttcatggtcttatggtgaagttaagaaacctgaaacaatcaactaccgtacgctcaaa
ccagaacgcgaaggtctcttcgacgaagtgatctttggtcctactaaagactgggaatgt
gcgtgtgggaaatacaaacgtatccgttataaaggtattgtttgtgaccgctgtggtgtt
gaagtaacacgtgctaaggttcgtcgcgaacgtatgggtcacatcgagttgaaagcacca
gtatcacatatctggtacttcaagggaatcccttctcgtatgggattgactttggatatg
agtcctcgtgcgcttgaagaagttatttacttcgcagcttacgtggttatcgatccaaag
gaaacgccacttgagccaaaatctctcttgactgaacgtgaatatcgtgaaaaattgcaa
gagtatggtcatggttcatttgtcgctaaaatgggtgcagaagcaatacaagatctcttg
aaacaagtagatttggaagtggaaattgctgaactcaaagaagagttgaagacagcaact
ggtcaaaaacgtgttaaagcagttcgtcgtttggacgttcttgatgccttctacaagtct
ggtaataaaccagaatggatggtacttaacatcttgccagtattgccaccagatcttcgt
ccgatggttcaattggacggtggtcgttttgcagcatctgacttgaacgacctctaccgt
cgtgtgatcaaccgtaacaaccgtttggctcgtttgcttgagttgagtgctccaggtatc
atcgtgcaaaacgaaaaacgtatgttgcaagaagcggttgacgctcttattgataatgga
cgtcgtggtcgtccaattactggaccaggtagtcgtccacttaaatctttgagtcacatg
cttaaaggtaaacaaggccgtttccgtcaaaacttacttggtaaacgtgtcgacttctct
ggacgttccgttattgccgttggtccaacacttaaaatgtatcaatgtggtgttccccgt
ttgatggccatcgaacttttcaaaccatttgttatgcgtgaaatcgttgcgcgtgaatac
gcaggtaacgtgaaagctgctaaacgtatggttgaacgtggtgacgaacgtatttgggat
attcttgaagatgttatcaaggaacacccagtacttcttaaccgcgcacctaccctccac
cgtttgggtatccaagccttcgaacctgtcttgattgatggtaaggcccttcgtcttcac
ccattggtatgtgaggcctacaatgccgactttgacggtgaccaaatggccatccacgtt
ccattgtctgaagaagctcaagctgaagcacgtttgctccttcttgcggctgaacacatc
cttaaccctaaagacggtaaaccggtcgtaacgccatctcaggatatggttcttggtaac
tactacttgactatggaagaagaaggccgtgagggtgaaggtatggtcttcaaggatatt
gatgaggcagttatggcttatcgtaatggttatgttcacttgcatagccgtgtcggtatc
gcagtagacagcatgcctgataaaccttggaaagaaaaccaacttcacaagattttcgtt
acaactgttggtaagattctctttaactcaatcattccagcagaaattccatatcttcaa
gaaacaacaaatgagaacttgacagatagtacaccagataagtacttccttgaaccaggt
caagatatccaaacagttattgatagtttggaaattaatgcgccattcaagaagaaaaat
cttggtaacatcatcgctgaaaccttcaaacgtcttcgtacgactgaaacatcagccttc
cttgaccgtttgaaagaccttggttactaccactcaacacttgctggattgacagtgggt
atcgccgatatcccagttatcgataacaaacaagaaattatcgatgctgctcaccaccgt
gttgaagaaattaacaaagctttccgtcgtggtttgatgacagaagatgaccgctatgtt
gctgttacaacaacatggcgtgaagcgaaagaagcacttgaaaaacgtctgattgagaca
caagatcctaagaacccaatcgttatgatgatggactcgggagctcgtggtaacatctct
aacttctctcaacttgccggtatgcgtggtttgatggctgctcctaacggacgtatcatg
gaattgcctatcctttcaaacttccgtgaaggtttgagtgttttggaaatgttcttctct
actcacggtgcgcgtaaaggtatgaccgatacggcccttaagacagctgactcaggttac
cttactcgtcgtctggttgatgttgctcaagatgttattattcgtgaagatgactgtgga
acagatcgtggtcttctcatccgtgctattactgacggtaaagaagttacggaaacactt
gaagaacgtcttcaagggcgttatactaagaaatcagttaagaaccctacaacaggtgaa
gtaatcgtaggtccagatactttgattactgaagacatggctgcagctattgtcaatgct
ggtgttgaagaagtaactatccgttcagtctttacatgtaacacacgtcacggtgtctgc
cgtcactgttacggtatcaacttggcgacaggtgatgcggttgaagttggtgaagcagtt
ggtactatcgctgcccaatctatcggggaacctggtacacagcttaccatgcgtaccttc
cacaccggtggggtagcctcaaacaccgatatcacacagggtcttccacgtatccaggaa
atctttgaagcacgtaaccctaaaggggaagcggttatcactgaagttaagggtactgtt
attgaaatcgaagaagatgctgcgacacgtactaagaaagtctttgttcaaggtaagact
ggaatgggtgagtacgtcgttccatttacagctcgtatgaaagtagaagttggtgacgaa
gtacaccgtggtgcggccttgacagaagggtcaatccaacctaaacgtctccttgaagta
cgtgataccttgtcagttgaaacttatcttcttgcagaagtgcaaaaagtttaccgtagc
caaggggtagaaatcggtgacaaacacgtcgaagtaatggttcgtcaaatgcttcgtaaa
gtatgcgttatggatccaggtgatacagacctccttccaggtacacttatggacatttct
gacttcacagatgctaacaaggatattgttatctctggtggtgttcctgcaacatctcgt
ccagtccttcttggtattacgaaagcctcacttgaaacaaattcattcttatcagcggct
tccttccaagaaacaacacgtgtccttacagatgcagctatccgtggtaagaaagaccat
ctccttggtcttaaagaaaatgttattattggtaagactatccctgctggtacaggcatg
gctcgttaccgtaacattgaaccactttcagttaacgaagttgaagttattgaaaacatt
gctgttgatgaagcaattgtggaaacatctgaagactaa
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integrated database retrieval system
