Stella vacuolata: STVA_13820
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Entry
STVA_13820 CDS
T06335
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
svc
Stella vacuolata
Pathway
svc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STVA_13820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svc03019
]
STVA_13820
03009 Ribosome biogenesis [BR:
svc03009
]
STVA_13820
Enzymes [BR:
svc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
STVA_13820
Messenger RNA biogenesis [BR:
svc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STVA_13820
Ribosome biogenesis [BR:
svc03009
]
Prokaryotic type
rRNA processing factors
STVA_13820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Ogr_Delta
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BBK41362
LinkDB
All DBs
Position
1470355..1473966
Genome browser
AA seq
1203 aa
AA seq
DB search
MAKRMLIDATHPEETRVVILSGSRLEEFDFETSTKKQVKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPVADREALLAEHAAADEDDDEFDAEPRRRSRRPRRGGRD
GGGREAASNDAGDGERDAGGADAGGDAEAASDAAAWDHRAEQRDEREQPEQTWSGQDDSG
QDDSGQDRAEAASPEGEPADPSATDGRASSGGAIEPQPGAEPIWGAPAGDEYAATDAADS
SKGADDATRPPPAMPTAEGLSVPSLRSEPIGRYETDQDGGGDASGRPAGDDETQSGEPEE
ALEAAPAPTAEEEAERVEAAAAIETLGGDELEDVRRRRQRSTRQYKIQEVIKRRQILLVQ
VTKEERGNKGAALTTYLSLAGRYCVLMPNAGRSGGGVSRKIVNPVDRRRLKSLIEEMQLP
DGTSVIVRTAGSERSRAEIKRDLEYLLRLWDEIRDLTMQSTAPALVYEEGKLIKRAIRDL
YSRDIEEILVEGEDAYREAKDFMRMLMPSHAKRVQPYRDPGIPLFNRFQIDQQIDAIHSP
VVQLKSGGYIVINPTEALVAIDVNSGRSTRERNIEETAYRTNLEAADEIARQLRLRDLAG
LIVIDFIDMEEGRNQHAVERRLKEAMKVDRARIQIGRISPFGLLELSRQRLRPSIFETST
QPCPHCGGTGHIRSTESTALHVLRAIEEEGLRRRSAEIRVTVPTSVALYMLNQKRATLSD
IERRYAFEVFIDRDDALIPPDYRLERLRVRAASDAPPLPAPLPIIPEDDDLDIADEDVTD
EEEAEEAASQPAAAESEPTPTEGAGEDEDGGRRRRRRRRRRDDRPQGDEAAAGEEQARPD
AAPAGEHAQDDDRPEDGLRPAAAAEPATAEDASSEDGEEGEDGPEAAEGGDDEDQQARRR
RRRGRRGGRRRTRREDEASPENGEAGTPAAAEAQAAPEPAPEAAAARPAMIRPPLNTRDA
VEALFEAMEIDQERTVVRPAAGAAEDPVDDPWRSTLPPVEPSVAATVPEPRPEPSAPTEP
EAAAPEPTPEPPTPEQPGSEAPVTEAPVPEAPVAEASVPESLEAGPAAAAPVVPEPVVSE
PLPVEPTAPAEPTAPAEPTAPAEPTAPAEPTAPAEPTAPAEPTAPAEPTAPAEPTAPAEP
TAPAEPTAPAEPTAPAEPAVPAEPVAVAEAGQSEPVAAAAEPAAAEPSRPPRKGWWQRLV
ETR
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgtatgttgatcgatgccacccatcccgaagaaacacgggtggtcatcctt
tccggtagccgtctggaagagttcgatttcgagacgtccaccaagaagcaggtcaaaggg
aatatctatctcgccaaggtcacccgggtagagccgtcgctccaggcggcgttcgtcgag
tatggcggcaaccgccacggcttcctggcgttcagcgagatccatccggactattaccgc
atcccggtcgccgaccgcgaggcgctgctggccgagcatgccgccgccgacgaggacgac
gacgagttcgacgccgagccccgccggcgctcgcgccggccgcggcgcggcggtcgcgac
ggcggtggccgtgaggccgcgtcgaacgacgcgggcgacggcgagcgggacgcgggcggt
gcggatgcgggcggcgatgccgaggcggcgtcggacgccgccgcctgggaccaccgcgcg
gaacagcgggacgaacgcgagcagcccgagcagacgtggtccggccaggacgattcgggc
caggacgattcgggccaggatcgggccgaagcggcttcgcccgaaggcgagcctgccgac
ccgagcgcgaccgacggtcgtgcctcgtccggcggggcgatcgagccgcagcccggcgcc
gagccgatctggggcgccccggccggtgacgagtacgccgcgacggacgcggccgattcg
agcaagggcgccgacgacgcgacccgcccgccgccggcgatgccgacggccgaaggcctg
tccgttccgagcctccgttccgagccgatcggccggtacgagaccgaccaggatggcggc
ggggacgcatcgggccggccggccggcgacgacgagacgcagtccggcgagccggaagag
gccctggaggccgcgccggcgccgaccgccgaggaagaggccgagcgggtcgaggccgca
gccgccatcgagaccctgggcggcgacgagctggaggacgtgcggcgccggcgccagcgc
agcacccgccagtacaagatccaggaagtcatcaagcgccggcagatcctgctggtccag
gtcaccaaggaagagcgcggcaacaagggcgcggcgctgaccacctacctgtcgctggcc
ggccgctactgtgtgctgatgcccaatgccggccgcagcggcggcggcgtctcgcgcaag
atcgtcaaccccgtcgaccgccgccgcctgaagtcgctgatcgaggagatgcagctgccc
gacggcacctcggtcatcgtccgcaccgcgggcagcgagcgcagccgggccgagatcaag
cgcgacctcgaatacctgctgcggctctgggacgagatccgcgacctgacgatgcagtcg
acggcgccggccctggtctatgaggaaggcaagctgatcaagcgggcgatccgcgacctc
tattcccgcgacatcgaggaaatcctggtcgaaggcgaggacgcctatcgcgaggccaag
gatttcatgcggatgctgatgccgagccacgccaagcgcgtgcagccgtatcgcgatccc
ggcatcccgctgttcaaccgcttccagatcgaccagcagatcgatgcgatccacagcccg
gtcgtccagctgaagtcgggcggctacatcgtcatcaacccgaccgaggcgctggtcgcg
atcgacgtcaactccggccgctcgacccgcgagcgcaacatcgaggagacggcgtaccgc
accaacctggaggcggcggacgagatcgcccgccagctgcgcctgcgcgacctggccggc
ctgatcgtcatcgacttcatcgacatggaggagggccgcaaccagcacgcggtcgaacgc
cgcctgaaggaggcgatgaaggtcgaccgcgcgcgcatccagatcgggcggatcagcccc
ttcggcctgctcgagctgtcgcgccagcgcctgcgtcccagcattttcgagacctcgacc
cagccctgcccgcattgcggcggcaccggccatatccggtcgacggaatcgaccgcgctg
catgtgctgcgcgcgatcgaggaagaggggctgcggcggcgcagcgccgagatccgggtg
accgtgcccacctcggtcgcgctctacatgctgaaccagaagcgcgcgaccctgtcggac
atcgagcgccgctatgccttcgaggtgttcatcgaccgcgacgacgcgctgatcccgccg
gactaccggctggagcggctgcgcgtgcgggcggcgagcgatgcgccgcccttgccggcg
ccgctgccgatcattcccgaggatgacgacctcgacatcgccgacgaggacgtgacggac
gaggaggaggccgaggaggccgcatctcagccggccgcggccgagagcgagcccaccccg
actgaaggtgccggcgaggacgaggatggcggccgccgccgtcgccgccgccgtcgccgc
cgggatgaccggccgcagggggacgaggccgccgcgggcgaggagcaggccaggcccgat
gcggcgccggccggcgagcatgcccaggacgacgatcgtcccgaggacgggctgcgcccg
gccgcggcggccgagcccgccaccgccgaggatgcgtcctcggaggacggcgaagagggc
gaggacggcccggaagcggcggaaggcggcgacgacgaggaccagcaggcccggcgtcgg
cggcggcgcggccgccgcggcggtcggcggcgcacccggcgcgaggacgaggcatcgccc
gagaacggcgaggccggcaccccggccgcagccgaggcgcaggcggcgccggagcccgca
ccggaggcagcggccgcccgcccggcgatgatccgcccgccgctcaacacccgcgatgcg
gtcgaggcattgttcgaggccatggaaatcgaccaggaacgcacggtcgtccggccggcg
gccggcgccgccgaggatccggtcgacgatccctggcgatcgaccctgccgccggtcgag
ccgtcggttgccgcgacggtgccggagccgcggcccgagccgtcggcaccgaccgagccg
gaggccgcggcgcccgagcccacgcccgagccgcccacgcccgagcagcccgggtcggaa
gcgcccgtgacagaagccccggtgccggaagccccggtggcggaagcctcggtgccggag
tcgctggaagccgggccggctgcagccgccccggtcgtcccggagccggtcgtttccgag
ccactcccggtcgagcccaccgctcccgcggagcccaccgctcccgcggagcccaccgct
cccgcggagcccactgctcccgcggagcccaccgctcccgcggagcccactgctcccgcg
gagcccactgctcccgcggagcccactgctcccgcggagcccaccgcccccgcggagccc
actgctcccgcggagcccaccgctcccgcggagcccaccgcccccgcggagcctgccgtg
ccggcggaaccggtcgccgttgcggaggccgggcagtcggagcccgtcgccgcggcggcg
gaaccggctgcggcagagccgtcgcggccgccgcgcaagggctggtggcagcgcctcgtc
gagacgcgctga
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