Stella vacuolata: STVA_28590
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Entry
STVA_28590 CDS
T06335
Name
(GenBank) MBL fold hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
svc
Stella vacuolata
Pathway
svc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STVA_28590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svc03019
]
STVA_28590
Messenger RNA biogenesis [BR:
svc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STVA_28590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
RNase_J_C
Motif
Other DBs
NCBI-ProteinID:
BBK42839
LinkDB
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Position
3045677..3047368
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AA seq
563 aa
AA seq
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MNAPPSAKASATFPPGAPQDLHFLALGGSGEIGMNLNLYAYRGKWLMVDLGVTFGDDSTP
GVDVIMPDIAFIAERRDALCGLVLTHAHEDHIGAVQYLWPRLQCPVYATPFTAALLRRKL
AETGLSDMPITVIPMQGHFKVGPFDLELITLTHSIPEPNAVVIRTGQGTILHTGDWKLDP
DPLVGPVSDEAALRALGDEGVLAMIGDSTNALRDGESGSEGEVRSALMSLVARCKNRVAV
ACFASNVARLQTMIDVARATDRQIALVGRSLWRIVSAAKETGYLDRDTPFLDDREAAWLP
RERVLLVCTGSQGEPRAALPRIARGGHPQITLEAGDACIFSSRIIPGNEKSIGRLQDDLI
RLGVEVLTERDHFVHVSGHPCRDELVRMYQWVRPELAIPVHGEHRHMAAHAELALACQVP
QALVTANGSLIRLAPGKPAIVAQVPSGRVALEGDALLPIDGPSLKARTRIASHGAVVATL
VLNGEGKVAAPARVTAPGLFDDEADAAELSALGRLATGALDRLSRSDRRDDATVEAAVAS
AMRRYVREGRGKRPTMSVHLIRV
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgccgccatcggcgaaggcgtccgccacgttcccgccgggcgccccccaggac
ctgcacttcctcgccctcggcggatcgggcgagatcggcatgaacctcaacctctacgcc
tatcgcggcaagtggctgatggtcgatctcggtgtgaccttcggggacgattcgacgccg
ggcgtggacgtcatcatgccggacatcgccttcatcgccgaacggcgggacgcgctgtgc
gggctcgtcctgacccatgcgcacgaggaccatatcggcgccgtccagtatctctggccg
cggctgcaatgccccgtctacgccacgcccttcaccgcggccctgctgcggcgcaagctg
gcggagaccgggctgtcggacatgccgatcaccgtcatcccgatgcaggggcacttcaag
gtcggcccgttcgacctggagctgatcacgctgacccattcgattccggagccgaatgcg
gtcgtgattcgcaccggccagggcaccatcctgcataccggcgactggaagctcgatccc
gacccgctggtcggcccggtgtccgacgaggcggccctgcgcgcgctcggcgacgagggc
gtgctggcgatgatcggcgactcgaccaacgccctgcgcgacggcgagtccggctcggag
ggggaggtgcggagcgcgctgatgtcgctggtcgcgcgctgcaagaaccgcgtcgcggtc
gcctgcttcgcctccaacgtcgcccgcctgcagacgatgatcgacgtcgcccgggcgacc
gaccgccagatcgcgctggtcgggcgttcgttgtggcgcatcgtctcggcggcgaaggag
accggctacctcgatcgcgacacgcccttcctcgacgaccgcgaggcggcgtggctgccg
cgcgagcgcgtcctgctggtgtgcaccggcagccagggcgagccgcgcgccgccctgccg
cgcatcgcccgcggtggccatccgcagatcacgctggaggcgggcgacgcctgcatcttc
tcctcccgcatcatcccgggcaacgagaagtcgatcggccggctccaggacgacctgatc
cggctcggcgtggaagtgctgaccgagcgggaccatttcgtccatgtctcgggccatccc
tgccgcgacgagctggtgcgcatgtaccagtgggtccggccggagctggcgatcccggtt
catggcgagcatcgccacatggccgcccatgccgagctggcgctggcctgccaggtgccg
caggcgctggtcaccgccaacggctcgctgatccggctggcgcccggcaagcccgccatc
gtcgcccaggtgccgtccggccgggtggcgctggagggggacgccctgctgccgatcgac
gggccctcgctcaaggcccgcacccgcatcgccagccacggcgcggtcgtcgccaccctg
gtcctgaacggcgagggcaaggtcgccgcaccggcgcgggtgacggcgcccggcctgttc
gacgacgaggcggacgccgccgaactgtcggcgctgggccggctggcgaccggggcgctg
gaccgcctcagccgctccgaccggcgcgacgatgcgacggtcgaggcggcggtggcgtcg
gccatgcgacgctatgtccgcgaagggcgtggaaaacggccgacgatgtccgtacatctg
atccgggtctga
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