KEGG   Stella vacuolata: STVA_28590
Entry
STVA_28590        CDS       T06335                                 
Name
(GenBank) MBL fold hydrolase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
svc  Stella vacuolata
Pathway
svc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:svc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    STVA_28590
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:svc03019]
    STVA_28590
Messenger RNA biogenesis [BR:svc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     STVA_28590
SSDB
Motif
Pfam: RNase_J_b_CASP RMMBL Lactamase_B Lactamase_B_2 RNase_J_C
Other DBs
NCBI-ProteinID: BBK42839
LinkDB
Position
3045677..3047368
AA seq 563 aa
MNAPPSAKASATFPPGAPQDLHFLALGGSGEIGMNLNLYAYRGKWLMVDLGVTFGDDSTP
GVDVIMPDIAFIAERRDALCGLVLTHAHEDHIGAVQYLWPRLQCPVYATPFTAALLRRKL
AETGLSDMPITVIPMQGHFKVGPFDLELITLTHSIPEPNAVVIRTGQGTILHTGDWKLDP
DPLVGPVSDEAALRALGDEGVLAMIGDSTNALRDGESGSEGEVRSALMSLVARCKNRVAV
ACFASNVARLQTMIDVARATDRQIALVGRSLWRIVSAAKETGYLDRDTPFLDDREAAWLP
RERVLLVCTGSQGEPRAALPRIARGGHPQITLEAGDACIFSSRIIPGNEKSIGRLQDDLI
RLGVEVLTERDHFVHVSGHPCRDELVRMYQWVRPELAIPVHGEHRHMAAHAELALACQVP
QALVTANGSLIRLAPGKPAIVAQVPSGRVALEGDALLPIDGPSLKARTRIASHGAVVATL
VLNGEGKVAAPARVTAPGLFDDEADAAELSALGRLATGALDRLSRSDRRDDATVEAAVAS
AMRRYVREGRGKRPTMSVHLIRV
NT seq 1692 nt   +upstreamnt  +downstreamnt
atgaacgcgccgccatcggcgaaggcgtccgccacgttcccgccgggcgccccccaggac
ctgcacttcctcgccctcggcggatcgggcgagatcggcatgaacctcaacctctacgcc
tatcgcggcaagtggctgatggtcgatctcggtgtgaccttcggggacgattcgacgccg
ggcgtggacgtcatcatgccggacatcgccttcatcgccgaacggcgggacgcgctgtgc
gggctcgtcctgacccatgcgcacgaggaccatatcggcgccgtccagtatctctggccg
cggctgcaatgccccgtctacgccacgcccttcaccgcggccctgctgcggcgcaagctg
gcggagaccgggctgtcggacatgccgatcaccgtcatcccgatgcaggggcacttcaag
gtcggcccgttcgacctggagctgatcacgctgacccattcgattccggagccgaatgcg
gtcgtgattcgcaccggccagggcaccatcctgcataccggcgactggaagctcgatccc
gacccgctggtcggcccggtgtccgacgaggcggccctgcgcgcgctcggcgacgagggc
gtgctggcgatgatcggcgactcgaccaacgccctgcgcgacggcgagtccggctcggag
ggggaggtgcggagcgcgctgatgtcgctggtcgcgcgctgcaagaaccgcgtcgcggtc
gcctgcttcgcctccaacgtcgcccgcctgcagacgatgatcgacgtcgcccgggcgacc
gaccgccagatcgcgctggtcgggcgttcgttgtggcgcatcgtctcggcggcgaaggag
accggctacctcgatcgcgacacgcccttcctcgacgaccgcgaggcggcgtggctgccg
cgcgagcgcgtcctgctggtgtgcaccggcagccagggcgagccgcgcgccgccctgccg
cgcatcgcccgcggtggccatccgcagatcacgctggaggcgggcgacgcctgcatcttc
tcctcccgcatcatcccgggcaacgagaagtcgatcggccggctccaggacgacctgatc
cggctcggcgtggaagtgctgaccgagcgggaccatttcgtccatgtctcgggccatccc
tgccgcgacgagctggtgcgcatgtaccagtgggtccggccggagctggcgatcccggtt
catggcgagcatcgccacatggccgcccatgccgagctggcgctggcctgccaggtgccg
caggcgctggtcaccgccaacggctcgctgatccggctggcgcccggcaagcccgccatc
gtcgcccaggtgccgtccggccgggtggcgctggagggggacgccctgctgccgatcgac
gggccctcgctcaaggcccgcacccgcatcgccagccacggcgcggtcgtcgccaccctg
gtcctgaacggcgagggcaaggtcgccgcaccggcgcgggtgacggcgcccggcctgttc
gacgacgaggcggacgccgccgaactgtcggcgctgggccggctggcgaccggggcgctg
gaccgcctcagccgctccgaccggcgcgacgatgcgacggtcgaggcggcggtggcgtcg
gccatgcgacgctatgtccgcgaagggcgtggaaaacggccgacgatgtccgtacatctg
atccgggtctga

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