Streptomyces viridosporus: CP969_14110
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Entry
CP969_14110 CDS
T07568
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
svd
Streptomyces viridosporus
Pathway
svd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP969_14110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svd03019
]
CP969_14110
03009 Ribosome biogenesis [BR:
svd03009
]
CP969_14110
Enzymes [BR:
svd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CP969_14110
Messenger RNA biogenesis [BR:
svd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CP969_14110
Ribosome biogenesis [BR:
svd03009
]
Prokaryotic type
rRNA processing factors
CP969_14110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QEU85722
LinkDB
All DBs
Position
complement(3027123..3031424)
Genome browser
AA seq
1433 aa
AA seq
DB search
MLEPIEPTEGSEPNTPSDTLPPRRRRRAASRPAGPPAVTAGTAETVTPAIPAAEPVGTAV
PSGADESAEPVAQQSAEAGKESREAAPEASGTAAPRRRRVVRRASAPAGAPVAAEAAETV
VAASAPAAPEDTEALGTPEAPARTAASSEDAAPRRTRRRATRSATSPTAATAGKTESAEA
PEPAPSARATGAEEAPEAGEATAEVSEAPAAAEATVAAETTEPAETTEDTAPRRTRRRVS
RRATAPAGAAEGDAGESARTTASPGAAEEAPVAETPAKSVETPAKSAEAPAAEPAGPVQA
APGEAEAAAPRRRRRVTRKAAAGFAEPARSAEPARAEAETAPRRPARPAVAVFQPPVFTE
PRFQTPERAAAEAAAGVAEPAEPEETEEWAEEQQPAASRRRRRRGAGDEAEAAPAAEAVP
ATRTEDEAEEADESAEDHAEGEDQEDGETAGSRRRRRRGGRRRRRGESAENDAEGGESAD
TESDRVFAEQAAQDAEDTAEQAEEDAEDAEEAAEQSQEGPDAGTGSSSSRRRRRRRRRAG
DSTGEAEPASDDPERTVVKVREPRKAAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRV
PIITEAEFLARREAVERVMVVRQHGDRTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKV
QNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQVTKDPI
GHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTA
AEGASEEELRRDVERLQGQWEDIQKKSKNGNAPTLLYGEPDMTVRVVRDIFNEDFSKVVV
SGPDAWETIHGYVSHVAPDLADRLQKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLV
IDRTEAMVVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMV
LESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRG
VIVHLDQPAAAGGGGKRRKRARAGAADQPHEHEAVASAETAEQEAEAETEAPEPVALPVS
SSELPASLEQGGAPIAPDEELYSSVAEAEAAAARGRTRRRASRRVSAPAGAPKRETVRAD
RPAAEVPTAQDVTAEQEAARPVLPEPAAEALAEPAAVEDAVVAEPVTEAREAEAPAAEEA
APQGRTRRRATRRVSAPTGSPQGAEAAVVTVTEPVPTVTEAPEPQAEEAPAAPAEAPAEA
AAPARPRRRAVRKPTTPTASEEAAVVVVPSAPAEETVPVDGAAPAEEPAPAVAEEAAAEA
APAKKAARTAAKKATAKKAATKKTAAKKTVAKKTTAKKAAKATEATAAEEPATEATATEA
TAAKTTAKKATAKKATAKKTTAKKTTAKKAAAKKTAAAEQQSPASVSTTADED
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgatcgagcccaccgagggctccgaaccgaacacccccagcgacaccctg
ccgccgcgccggaggcgccgtgcggcgtcccgcccggccggcccgcccgccgtgacggcc
ggcacggccgagaccgtcacgccggccataccggccgcggagcccgtcggcactgcggtg
ccttccggggctgacgagtccgccgagcccgtggcgcagcagagtgccgaggccgggaag
gagagccgcgaagcggctcccgaggcgtccgggaccgccgcgccgcgtcgtcgccgcgtc
gttcgccgtgcctccgcgcccgccggggcgccggtggcggcggaggccgccgagaccgtc
gtagcggcgagcgctccggccgcgcccgaggacaccgaggccctcgggacccctgaggct
cccgcacggaccgccgcctcctccgaggacgccgctccccggcgcacccgccgccgcgcg
acgcgcagtgcgacctcaccgacggcggccaccgccggaaagacggagagcgccgaggca
ccggagccggcgccgtccgcgcgggccaccggggccgaggaggcccccgaagccggggaa
gccaccgccgaggtctccgaggcgcccgcggcagccgaggccaccgtggccgcagagacc
accgagcccgccgagaccaccgaggacaccgcgccgcgccgtacccggcgtcgcgtctcg
cgccgtgccaccgcgcccgccggggcggcggagggcgacgcgggcgagtccgcgcggacc
accgcctctcccggcgccgccgaggaggccccggtggccgaaacgcccgcgaagagcgtc
gaaacccccgcgaagagcgccgaagcgcccgccgccgagccggccgggcccgtgcaggcc
gcgcccggggaagccgaggccgccgctccgcggcgccgccgccgggtgacccgcaaggcc
gccgccgggttcgccgagccggcgcgctccgccgagcccgcccgggccgaggccgagacc
gctccgcggcgtccggcacgtccggccgtcgccgtgttccagccgcccgtcttcaccgag
ccccggttccagaccccggagcgggccgccgccgaggcggccgccggggtggccgaaccg
gcggagcccgaggagaccgaggagtgggccgaggagcagcagcccgccgcctcgcgccgc
cggcggcgccggggtgcgggcgacgaggccgaggccgcgcccgccgccgaggccgtcccc
gcgacccgcaccgaggacgaggccgaggaggccgacgagtcggccgaggaccacgccgag
ggcgaggaccaggaggacggcgagaccgccggttcgcgccgtcgccgtcgccggggcggc
cgccgccgcaggcgcggcgagtccgccgagaacgacgccgagggcggcgagtccgcggac
accgagagcgaccgggtcttcgccgagcaggccgcccaggacgccgaggacaccgcggag
caggccgaggaggacgcggaggacgcggaggaagccgccgagcagtcccaggagggcccg
gacgccgggacgggctccagcagcagccggcgtcgtcgccgccgccgtcgccgggccggt
gacagcaccggcgaggccgagcccgcctccgacgaccccgagcgcaccgtcgtcaaggtc
cgcgagccgcgcaaggcggccgagccgtccgacgaggtgcagtccatcaagggctccacg
cgcctggaggcgaagaagcagcgccgccgcgagggccgcgagcagggccgccgccgggtg
ccgatcatcaccgaggccgagttcctggcccgtcgcgaggccgtcgagcgcgtgatggtg
gtccgccagcacggcgaccgcacgcagatcggcgtcctggaggacggcgtgctcgtcgag
cactacgtcaacaaggagcaggcgacctcgtacgtcggcaacgtctacctcggcaaggtg
cagaacgtgctgccgtcgatggaggccgccttcatcgacatcggcaagggccgcaacgcc
gtgctctacgcgggcgaggtcaacttcgaggcgctgggcatggcgaacggcccgcgccgc
atcgagtccgcgctgaagtcgggccagtcggtcctggtccaggtcaccaaggacccgatc
gggcacaagggcgcccgcctgaccagccaggtctccctcccgggccgctacctcgtgtac
gtccccgagggctcgatgaccggcatcagccgcaagctgcccgacaccgagcgggcccgg
ctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgcc
gccgagggcgcgagcgaggaggagctgcgccgggacgtcgagcggctgcaggggcagtgg
gaggacatccagaagaagtccaagaacggcaacgcgccgacgctgctgtacggcgagccg
gacatgaccgtccgggtcgtgcgggacatcttcaacgaggacttctccaaggtcgtcgtc
agcggtcccgacgcctgggagaccatccacggctacgtctcccacgtcgcgccggacctc
gccgaccggctgcagaagtggaccagcgaggtcgacgtcttcgccacgtaccggatcgac
gagcagctcgccaaggcgctggaccgcaaggtctggctgcccagcggcggttcgctggtg
atcgaccggaccgaggcgatggtcgtcatcgacgtcaacaccggcaagttcaccggtcag
ggcggcaacctcgaggagacggtcaccaggaacaacctggaggcggccgaggagatcgtg
cgccagctgcggctgcgcgacctcggcggcatcatcgtcatcgacttcatcgacatggtc
ctggagtccaaccgggacctggtgctgcggcgcctgctggagtgcctgggccgcgaccgt
acgaagcaccaggtcgccgaggtgacgtcgctgggtctggtccagatgacccgcaagcgg
gtcggccagggcctgctggagtcgttctcggagacctgcgtccactgcaacgggcgcggt
gtcatcgtccacctggaccagcccgcggccgccggtggcggcggcaagcgccgcaagcgg
gcgcgtgccggtgcggcggaccagccgcacgagcacgaggccgtcgcgagcgccgagacg
gccgagcaggaggcggaggcggagaccgaggcccccgaaccggtcgccctgccggtgtcc
tcctccgagctcccggcttcgctcgagcagggaggcgcccccatcgcgccggacgaggag
ctgtacagcagcgtcgccgaggcggaggccgcggccgcacgcggacggacgcgccgccgg
gcgagccggcgggtgtcggccccggccggtgcgccgaagcgcgagacggtcagggccgac
cggcccgcggccgaggtgccgaccgcccaggacgtgacggcggagcaggaggccgcgcgt
ccggtgcttccggagccggccgccgaggcactggccgagcccgccgccgtcgaggacgcg
gtggtcgccgagccggtgaccgaggcccgggaagccgaggccccggccgccgaggaggcc
gccccccagggccgcacgcgccgccgcgcgacccgcagggtctccgcgccgaccggttcg
ccgcagggagcggaggccgcggtggtgacggtgaccgagcccgtgcccacggtcaccgag
gcgcccgagccgcaggcggaggaggctccggccgccccggccgaggctcccgccgaggcc
gcggccccggcccgcccgcgccgtcgcgcggtgcgcaagcccaccacgcccaccgcgtcc
gaggaggcggccgtcgtggtcgtcccgtcggctccggcggaggagacggtcccggtggac
ggggcggcgcctgccgaggagcccgcgccggccgtcgccgaggaagcggccgccgaggcc
gctccggccaagaaggccgcccgcacggcggccaagaaggccacggcgaagaaggccgcc
acgaagaagacggcggccaagaagaccgtcgccaagaagacgacggccaagaaggcggcg
aaggccaccgaggcgaccgccgccgaggagcccgccaccgaggcgaccgccaccgaggcg
accgccgccaagacgaccgccaagaaggcgaccgcgaagaaggcgacggccaagaagacc
acggcgaagaagacgacggccaagaaggcggcggcgaagaagaccgcggcggccgagcag
cagtctcctgcgtccgtgtcgaccaccgccgacgaggactga
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