Streptomyces viridosporus: CP969_17880
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Entry
CP969_17880 CDS
T07568
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
svd
Streptomyces viridosporus
Brite
KEGG Orthology (KO) [BR:
svd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svd03016
]
CP969_17880 (thpR)
Enzymes [BR:
svd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
CP969_17880 (thpR)
Transfer RNA biogenesis [BR:
svd03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
CP969_17880 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QEU86355
UniProt:
A0A5J6FXQ2
LinkDB
All DBs
Position
complement(3886029..3886601)
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AA seq
190 aa
AA seq
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MRLFAAVLPPEDVIRELAAEVARLKELPGADGLRWTGRPGWHLTLAFYGEVDDALVPELT
ARLEWAASHTEPFGLALCGGGQFGHGRALWTGADGDLRTLRLLADRAEAAARRAGVPMGE
HRRYKAHLTLARSRDGVDTRPYLDALHGFRGRTWTVGELALVRSNLPRSGVPGEQPRYEA
VARRPLGAAG
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atgagactcttcgccgccgtgctgccgcccgaggacgtcatccgcgagctcgccgccgag
gtcgcccggctgaaggagctgcccggcgcggacggcctgcgctggaccggccgccccggc
tggcacctcacgctcgccttctacggcgaggtcgacgacgcgctcgtgcccgagctgacc
gcccgcctggagtgggccgcctcccacaccgagccgttcgggctggcgttgtgcgggggc
ggtcagttcgggcacggcagggccctgtggaccggcgcggacggtgacctgcgcaccctg
cgcctgctggccgaccgcgccgaggcggcggcgcgcagggcgggcgtgccgatgggggag
caccggcgctacaaggcccacctgacgctggcccgcagccgggacggcgtcgacacgcgg
ccgtacctggacgccctgcacgggttccgcggccgtacctggaccgtgggcgagctggcg
ctggtgcgcagcaacctgccgaggtcgggtgtgccgggcgagcagccccgctacgaggcg
gtcgcgcgcagaccgctcggggcggccggttag
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