Streptomyces viridosporus: CP969_22280
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Entry
CP969_22280 CDS
T07568
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
svd
Streptomyces viridosporus
Brite
KEGG Orthology (KO) [BR:
svd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svd03016
]
CP969_22280
Enzymes [BR:
svd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CP969_22280
Transfer RNA biogenesis [BR:
svd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CP969_22280
Prokaryotic type
tRNA splicing ligases
CP969_22280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEU87095
UniProt:
A0ABX6AIQ2
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All DBs
Position
4788331..4789524
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AA seq
397 aa
AA seq
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MSYVELPGAKVPIRLWTDPATVEEGALQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSRIEQVIPVGRGMHDDPVDPG
RLHGFAAGGWDDFWGRFGGVADAVRFREERAAKQMGTLGGGNHFVEVCVDTSGAVWLMLH
SGSRNIGKELAEHHIGVARQLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
SIMMALLKDVIRKEFKKAKPAFEPEISAHHNYVAEERYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNPASFNSASHGAGRRMSRNAAKRRFSTKDLEEQTRGVECRKDSG
VVDEIPGAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggaactgccgggtgcgaaggtgccgatccgtctgtggacggacccggcg
acggtcgaggagggcgccctccagcagctgcggaacgtggcgaccctgccgtggatcaag
ggcctggccgtgatgccggacgtgcactacggaaagggcgcgacggtcgggtcggtcatc
gcgatgcagggtgcggtgtgcccggcggcggtgggcgtcgacatcggctgcggcatgtcg
gcggtgcggacgtccctgacggcgaacgaccttcccggtgatctctcccggctgcggtcg
aggatcgagcaggtgatcccggtggggcgggggatgcacgacgacccggtcgacccgggc
cggctgcacggtttcgcggccggcggctgggacgacttctgggggcggttcggcggggtg
gcggacgcggtgaggttccgcgaggagcgggccgcgaagcagatggggacgctgggcggc
ggaaaccacttcgtggaggtctgcgtggacacctccggtgcggtctggctgatgctgcac
tccggttcccgcaacatcggcaaggaactcgccgagcaccacatcggtgtcgcccggcaa
ctcccgcacaaccagggcctggtcgaccgcgacctcgccgtcttcgtcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgcgaagtacaaccgc
tcgatcatgatggcgctcctgaaggacgtgatccgcaaggagttcaagaaggcgaagccg
gccttcgaaccggagatcagcgcgcaccacaactacgtggccgaggagcgctacgacggc
atggacctgctggtgacccgcaagggcgcgatccgcgcgggctccggcgagtacgggatc
atcccgggttccatgggcacgggctcgtacatcgtcaagggcctcggaaaccccgcctcc
ttcaactcggcctcgcacggcgccggtcggcgcatgagccgcaacgcggcgaagcggcgc
ttctcgacgaaggacctggaggagcagacgcggggcgtggagtgccgcaaggactccggc
gtcgtggacgagatcccgggtgcctacaagccgatcgagcaggtcatcgaccagcagcgg
gacctcgtggaggtcgtggcgaagctgaagcaggtcgtctgcgtgaagggctga
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