Streptomyces viridosporus: CP969_25940
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Entry
CP969_25940 CDS
T07568
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
svd
Streptomyces viridosporus
Pathway
svd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP969_25940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svd03021
]
CP969_25940
03019 Messenger RNA biogenesis [BR:
svd03019
]
CP969_25940
Transcription machinery [BR:
svd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CP969_25940
Messenger RNA biogenesis [BR:
svd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CP969_25940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QEU87733
UniProt:
A0ABX6ALM5
LinkDB
All DBs
Position
5579291..5581330
Genome browser
AA seq
679 aa
AA seq
DB search
MSDTTDLMGARVEETAAAPATDASAPATGAGSRRRRGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAASGAAAPAQAEPAPETKPKRRATSRTRTGEAAEKKADAKDEQA
PAEKAAAQQQIEIPGQPSPKASAPAEQAPAEEAAPAERRRRRATAEAGAPAAASETVTAE
AKAEPQAETPAQAQQQPQQGDARSDHEGGEGRRRDRRERGRERDRGDRGDRGGDRRGKGD
DQQQNQGGQSRQQNQQQGGGRQDDGYDDDGSGRRGRRGRYRDRRGRRGRDDVQEPQITED
DVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHITGAVRQPKEGE
RREKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDLVSPI
GKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVI
SSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGG
VDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNMELKLDRK
LADKRIFPAVDVDASGTRKEEILLGAEELGIVWKLRRVLHALDQQQAIELLLDKMKQTKS
NVEFLMQIQKTTPTPGNGD
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgctgccgcgcccgcc
acggacgcttccgcgcctgccaccggtgccggctcccggcggcgccgcggtaccggcctc
gagggcatggtgctggccgagctgcaacaggtcgcgtccggcctcggtatcaggggcacc
gcgcgcatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggccgcctcgggc
gccgccgccccggcccaggccgagcccgcccccgagaccaagcccaagcgccgcgccacc
tcccggacccgtacgggcgaggccgccgagaagaaggcggacgccaaggacgagcaggct
cccgccgagaaggccgcggcccagcagcagatcgagatcccgggccagccctccccgaag
gcctccgccccggccgagcaggcccccgccgaggaggccgcccccgccgagcgccgccgc
cgtcgcgccaccgccgaggccggtgccccggccgccgcgtccgagacggtcaccgccgag
gcgaaggccgagccccaggccgagaccccggcccaggcgcagcagcagccgcagcagggc
gatgccaggtccgaccacgagggcggcgagggccgccgccgggaccgccgtgagcgcggc
cgcgagcgtgaccgcggcgaccgcggtgaccgtggcggggaccgtcgcggcaagggcgac
gaccagcagcagaaccagggcggccagagccgtcagcagaaccagcagcagggcggcggc
cgccaggacgacggctacgacgacgacggcagcggccggcgcggccggcgcgggcgctac
cgcgaccgccgtggccgccgtggccgcgacgacgtgcaggagccgcagatcaccgaggac
gacgtcctgatcccggtcgcgggcatcctggacatcctcgacaactacgccttcatccgc
acctccggctacctgccgggcccgaacgacgtgtacgtctccctcgcccaggtccgcaag
aacggcctgcgcaagggcgaccacatcaccggcgcggtccgccagcccaaggagggcgag
cggcgcgagaagttcaacgcgctcgtccggctcgactccgtcaacggcatggcgcccgaa
cacggccgcggccgcccggagttcaacaagctcaccccgctgtacccgcaggaccgcctc
cgtctggagacggacccgggcgtgctgaccacccggatcatcgacctcgtgtcgccgatc
ggcaagggccagcgcggtctgatcgtggccccgccgaagaccggcaagaccatgatcatg
caggcgatcgccaacgcgatcacccacaacaaccccgagtgccacctgatggtcgtcctc
gtcgacgagcgtccagaagaggtcaccgacatgcagcggtcggtcaagggcgaggtcatc
tcctcgaccttcgaccgtccggccgaggaccacaccacggtcgccgagctcgccatcgag
cgcgccaagcgcctggtggagctgggtcacgacgtcgtcgtgctgctcgactcgatcacg
cgtctggggcgtgcgtacaacctcgccgccccggcctccggccgcatcctgtccggtggt
gtcgactcgaccgccctgtacccgccgaagcgcttcttcggtgcggcccgcaacatcgag
gacggcggctcgctgaccatcctcgccaccgccctggtggacaccgggtcccgcatggac
gaggtgatcttcgaggagttcaagggcaccggcaacatggagctcaagctcgaccggaag
ctcgccgacaagcggatcttccccgcggtggacgtcgacgcgtccggcacgcgcaaggag
gagatcctgctcggtgccgaggagctgggcatcgtctggaagctgcgccgggtgctgcac
gcgctcgaccagcagcaggcgatcgagctgctcctcgacaagatgaagcagaccaagtcg
aacgtcgagttcctgatgcagatccagaagacgacgccgacgccgggcaacggcgactga
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